Dataset Open Access
Root phenotyping data
Bouché, Frédéric; D'Aloia, Maria; Tocquin, Pierre; Lobet, Guillaume; Detry, Nathalie; Périlleux, Claire
Dataset presenting the root phenotyping analysis performed in the paper:
Bouché F, D’Aloia M, Tocquin P, Lobet G, Detry N, Périlleux C. 2016. Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana. Scientific Reports.
The dataset contains:
- 01-raw_images.zip: the orignal images of the petri dishes used for the analysis. The scale is 370 DPI
- 02-processed_images.zip: images enhanced, cropped and renamed for the analysis. Analysis was performed using SmartRoot (Lobet et al. 2011). Each image has its corresponding RSML file containing the root architecture data.
- plate_image_treatment.ijm: ImageJ macro for a pre-processing of the images, before the SmartRoot analysis
- root_architecture_analysis.R: R script used for the architecture data analysis
- root_architecture_data.csv : architecture data exported from SmartRoot.
- images.zip: the plots generated using the R script
| Name | Size | |
|---|---|---|
| 01-raw_images.zip md5:c72534d9581c70555536e323d7ead9cf |
766.1 MB | Download |
| 02-processed_images.zip md5:87ed35f85c8d2af3f5a1b9691d642683 |
118.7 MB | Download |
| figures.zip md5:9810e2d2c9079306373b7b0fd21776a3 |
363.6 kB | Download |
| plate_image_treatment.ijm md5:4e2021b77578a007c1721cb2ccf06120 |
4.6 kB | Download |
| readme.md md5:9083c14ac88d9e947785df0ae032af39 |
1.5 kB | Download |
| root_architecture_analysis.R md5:be447bbfcf606a39484eddfc1758fc76 |
12.2 kB | Download |
| root_architecture_data.csv md5:a1fec0357ccf0ce640c4d929117d1ab9 |
535.1 kB | Download |
- Publication date:
- May 3, 2016
- DOI:
-
- Keyword(s):
- root phenotyping rsml
- Published in:
- Scientific Reports: (2016).
- License (for files):
- Creative Commons Zero - CC0 1.0