Root phenotyping data
Creators
- 1. University Of Wiscon-Madison
- 2. GlaxoSmithKline Biologicals
- 3. Université de Liège
Description
Dataset presenting the root phenotyping analysis performed in the paper:
Bouché F, D’Aloia M, Tocquin P, Lobet G, Detry N, Périlleux C. 2016. Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana. Scientific Reports.
The dataset contains:
- 01-raw_images.zip: the orignal images of the petri dishes used for the analysis. The scale is 370 DPI
- 02-processed_images.zip: images enhanced, cropped and renamed for the analysis. Analysis was performed using SmartRoot (Lobet et al. 2011). Each image has its corresponding RSML file containing the root architecture data.
- plate_image_treatment.ijm: ImageJ macro for a pre-processing of the images, before the SmartRoot analysis
- root_architecture_analysis.R: R script used for the architecture data analysis
- root_architecture_data.csv : architecture data exported from SmartRoot.
- images.zip: the plots generated using the R script
Files
01-raw_images.zip
Files
(885.7 MB)
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