Dataset Open Access

Root phenotyping data

Bouché, Frédéric; D'Aloia, Maria; Tocquin, Pierre; Lobet, Guillaume; Detry, Nathalie; Périlleux, Claire

Dataset presenting the root phenotyping analysis performed in the paper:

Bouché F, D’Aloia M, Tocquin P, Lobet G, Detry N, Périlleux C. 2016. Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana. Scientific Reports.

The dataset contains:

- 01-raw_images.zip: the orignal images of the petri dishes used for the analysis. The scale is 370 DPI

- 02-processed_images.zip: images enhanced, cropped and renamed for the analysis. Analysis was performed using SmartRoot (Lobet et al. 2011). Each image has its corresponding RSML file containing the root architecture data. 

- plate_image_treatment.ijm: ImageJ macro for a pre-processing of the images, before the SmartRoot analysis 

- root_architecture_analysis.R: R script used for the architecture data analysis

- root_architecture_data.csv : architecture data exported from SmartRoot.

- images.zip: the plots generated using the R script

 

Files (885.7 MB)
Name Size
01-raw_images.zip md5:c72534d9581c70555536e323d7ead9cf 766.1 MB Download
02-processed_images.zip md5:87ed35f85c8d2af3f5a1b9691d642683 118.7 MB Download
figures.zip md5:9810e2d2c9079306373b7b0fd21776a3 363.6 kB Download
plate_image_treatment.ijm md5:4e2021b77578a007c1721cb2ccf06120 4.6 kB Download
readme.md md5:9083c14ac88d9e947785df0ae032af39 1.5 kB Download
root_architecture_analysis.R md5:be447bbfcf606a39484eddfc1758fc76 12.2 kB Download
root_architecture_data.csv md5:a1fec0357ccf0ce640c4d929117d1ab9 535.1 kB Download

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