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Published July 8, 2021 | Version v0.5.0
Software Open

TRON-Bioinformatics/covigator-ngs-pipeline: Release v0.5.0

Creators

  • 1. @TRON-Bioinformatics

Description

Major changes:

  • Add coverage analysis for FASTQ pipeline
  • Add Pfam domain annotations in the output VCFs
  • Add ConsHMM conservation scores annotations in the output VCFs

Minor changes:

  • Parametrise chromosome for FASTA pipeline, default is the Sars-CoV-2 chromosome
  • Parametrise global alignment parameters
  • Avoid calling external Nextflow workflows and reimplement internally due to performance reasons. Logic does not change

Files

TRON-Bioinformatics/covigator-ngs-pipeline-v0.5.0.zip

Files (63.4 MB)

Additional details

Related works

Is supplement to
https://github.com/TRON-Bioinformatics/covigator-ngs-pipeline/tree/v0.5.0 (URL)