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TRON-Bioinformatics/covigator-ngs-pipeline: Release v0.5.0

Pablo Riesgo-Ferreiro; Patrick Sorn; Thomas Bukur

Major changes:

  • Add coverage analysis for FASTQ pipeline
  • Add Pfam domain annotations in the output VCFs
  • Add ConsHMM conservation scores annotations in the output VCFs

Minor changes:

  • Parametrise chromosome for FASTA pipeline, default is the Sars-CoV-2 chromosome
  • Parametrise global alignment parameters
  • Avoid calling external Nextflow workflows and reimplement internally due to performance reasons. Logic does not change

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