Published June 10, 2013
| Version v1
Journal article
Restricted
Calochaete gen. nov. (Cyanobacteria, Nostocales), a new cyanobacterial type from the "páramo" zone in Costa Rica
- 1. Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, eské Bud jovice, Czech Republic, CZ-37005. Centre for Phycology, Institute of Botany, Czech Academy of Sciences, Dukelská 135, T ebo , Czech Republic, CZ-37982.
Description
Hauer, Tomáš, Bohunická, Markéta, Mühlsteinová, Radka (2013): Calochaete gen. nov. (Cyanobacteria, Nostocales), a new cyanobacterial type from the "páramo" zone in Costa Rica. Phytotaxa 109 (1): 36-44, DOI: 10.11646/phytotaxa.109.1.4, URL: https://www.mendeley.com/catalogue/42a79279-d2f6-3d22-9b23-1e0e61a92ad4/
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:E3423211FFF5FF93516CFFCAF637D130
- URL
- http://publication.plazi.org/id/E3423211FFF5FF93516CFFCAF637D130
References
- Berenderro, E., Perona, E. & Mateo, P. (2011) Phenotypic variability and phylogenetic relationships of the genera Tolypothrix and Calothrix (Nostocales, Cyanobacteria) from running water. International Journal of Systematic and Evolutionary Microbiology 61(12): 3039-3051. http://dx.doi.org/10.1099/ijs.0.027581-0
- Bischoff, H.W. & Bold, H.C. (1963) Phycological Studies. IV. Some soil algae from Enchanted Rock and related algal species. Universityof Texas Publications 6318: 1-95.
- Bornet, E. & Flahault, C. (1886) Revision des Nostocacees heterocystees contenues dans les principaux herbiers de France. Annales des Sciences Naturelles, Botanique, Septieme serie 3: 323-381.
- Bornet, E. & Flahault, C. (1887) Revision des Nostocacees heterocystees contenues dans les principaux herbiers de France. Annales des Sciences Naturelles, Botanique, Septieme serie 5: 51-129.
- Bornet, E. & Flahault, C. (1888) Revision des Nostocacees heterocystees contenues dans les principaux herbiers de France. Annales des Sciences Naturelles, Botanique, Septieme serie 7: 177-262.
- Boyer, S.L., Flechtner, V.R. & Johansen, J.R. (2001) Is the 16S-23S rRNA internal transcribed spacer (ITS) region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Molecular Biology and Evolution 18: 1057-1069. http://dx.doi.org/10.1093/oxfordjournals.molbev.a003877
- Casamatta, D.A., Gomez, S.R. & Johansen, J.R. (2006) Rexia erecta gen. et sp. nov. and Capsosira lowei sp. nov., two newly described cyanobacterial taxa from the Great Smoky Mountains National Park (USA). Hydrobiologia 561: 13-26. http://dx.doi.org/10.1007/s10750-005-1602-6
- Castenholz, R.W. (2001) General characteristics of the cyanobacteria. In: Boone, D.R. & Castenholz, R.W. (eds.) Bergey's manual of systematic bacteriology, 2nd edition, volume 1. Springer, New York, pp. 474-487.
- Chakravorty, S., Helb, D., Burday, M., Connell, N. & Alland, D. (2007) A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. Journal Microbiological Methods 69(2): 330-339, http:// dx.doi.org/10.1016/j.mimet.2007.02.005
- Ding, Y., Chan, C.Y. and Lawrence, C.E. (2004) S fold web server for statistical folding and rational design of nucleic acids. Nucleic Acids Research 32 (Supplement 2): W135-W141. http://dx.doi.org/10.1093/nar/gkh449
- Flechtner, V. R., Boyer, S.L., Johansen, J.R. & DeNoble, M.L. (2002) Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from arid soils. Nova Hedwigia 74: 1-24.
- Gardner, N.L. (1927) New Myxophyceae from Puerto Rico. Memoirs of the New York Botanical Garden 7: 1-144.
- Geitler, L. (1933) Diagnosen neuer Blaualgen von den Sunda-Inseln. Archiv fur Hydrobiologie Supplement 12: 622-634.
- Geitler, L. (1942) Schizophyta: Klasse Schizophyceae. In: Engler, A. & Prantl, K. (eds.) Die naturlichen Pflanzenfamilien, Zweite Auflage. Volume 1b. Wilhelm Engelmann, Leipzig, pp. 1-232.
- Gouy, M., Guindon, S. & Gascuel, O. (2010) SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221-224. http://dx.doi.org/10.1093/molbev/msp259
- Hoffmann, L., Komarek, J. & Kastovsky, J. (2005) System of cyanoprokaryotes (cyanobacteria) - state in 2004. Algological Studies 117: 95-115. http://dx.doi.org/10.1127/1864-1318/2005/0117-0095
- Janet, M. (1941). Westiellopsis prolifica, gen. et sp. nov., a new member of the Stigonemataceae. Annals of Botany 5(1): 167-170.
- Johansen, J.R., Kova c ik, L., Casamatta, D.A., Fu c ikova, K. & Kastovsky, J. (2011) Utility of 16S-23S ITS sequence and secondary structure for recognition of intrageneric and intergeneric limits within cyanobacterial taxa: Leptolyngbya corticola sp. nov. (Pseudanabaenaceae, Cyanobacteria). Nova Hedwigia 92(3-4): 283-302.
- Kastovsky, J., Fu c ikova, K., Hauer, T. & Bohunicka, M.(2011) Microvegetation on the top of Mt. Roraima, Venezuela. Fottea 11(1): 171-186.
- Katoh, K., Asimenos, G. & Toh, H. (2009) Multiple alignment of DNA sequences with MAFFT. In: Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis. Humana Press, Totowa, pp. 39-64.
- Komarek, J. & Anagnostidis, K. (1989) Modern approach to the classification system of Cyanotphytes 4 - Nostocales. Algological Studies 56: 247-345.
- Komarek, J. & Hauer, T. (2013) CyanoDB.cz - On-line database of cyanobacterial genera. Univ. of South Bohemia & Inst. of Botany AS CR. Available at http://www.cyanodb.cz (accessed 15 February 2013).
- Komarek, J. & Komarkova-Legnerova, J. (2007) Taxonomic evaluation of the cyanobacterial microflora from alkaline marshes of northern Belize. 1. Phenotypic diversity of coccoid morphotypes. Nova Hedwigia 84(1-2): 65-111. http://dx.doi.org/10.1127/0029-5035/2007/0084-0065
- Kotai, J. (1972) Instructions for preparation of modified nutrient solution Z8 for algae. Norwegian Institute for Water Research, publication B-11/69, Oslo, Blindern, 5 pp.
- Muhlsteinova, R. (2011) Aerophytic Cyanobacteria from San Gerardo de Rivas region, San Jose, CostaRica. BSc. Thesis (in Czech), University of South Bohemia, C eske Budejovice, 61 pp.
- Myers, N., Mittermeier, R.A., Mittermeier, C.G., da Fonseca, D.A.B. & Kent, J. (2000) Biodiversity hotspots for conservation priorities. Nature 403: 853-858. http://dx.doi.org/10.1038/35002501
- Nelissen, B., De Baere, R., Wilmotte, A. & De Wachter, R. (1996) Phylogenetic relationships of nonaxenic filamentous Cyanobacterial strains based on 16s rRNA sequence analysis. Journal of Molecular Evolution 42: 194-200. http://dx.doi.org/10.1007/BF02198845
- Novis, P.M. & Visnovsky, G. (2011) Novel alpine algae from New Zealand: Cyanobacteria. Phytotaxa 22: 1-24.
- Nubel, U., Garcia-Pichel, F., Muyzer, G. (1997) PCR primers to amplify 16S rRNA genes from cyanobacteria. Applied Environmental Microbiology 63: 3327-3332.
- Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2011) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61(3): 539-542. http://dx.doi.org/10.1093/sysbio/sys029
- Yilmaz, M., Phlips, E. J. & Tillett, D. (2009) Improved methods for the isolation of cyanobacterial DNA from environmental samples. Journal of Phycology 45: 517-521. http://dx.doi.org/10.1111/j.1529-8817.2009.00651.x
- Wilmotte, A., Van der Auwera, G. & Dewachter, R. (1993) Structure of the 16S ribosomal-RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (Mastigocladus laminosus HTF) strain PCC7518, and phylogenetic analysis. FEBS Letters 317: 96-100. http://dx.doi.org/10.1016/0014-5793(93)81499-P
- Woese, C.R. & Fox, G.E. (1977) Phylogenetic structure of the prokaryotic domain: The primary kingdoms. Proceedings of the National Acadademyof Sciences if the United states of America 74(11): 5088-5090.