Published September 5, 2020
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Systematics of Neotropical Spiny Mice, Genus Neacomys Thomas, 1900 (Rodentia: Cricetidae), from Southeastern Amazonia, with Descriptions of Three New Species
Creators
- 1. Maria Nazareth Ferreira Da Silva, & Mario Da Silva Nunes, & Programa de Pós-graduação em Zoologia, Instituto de Biociências, Universidade Federal de Mato Grosso (UFMT), Cuiabá, Brazil. & Maria Nazareth Ferreira Da Silva, & Instituto Nacional de Pesquisa do Pantanal (INPP), Museu Paraense Emílio Goeldi (MPEG) - Programa de Capacitação Institucional, Cuiabá, Brazil.
- 2. Eliécer E. Gutiérrez, & Coleção de Mamíferos, Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Brazil.
- 3. Daniela Cristina Ferreira, & Programa de Pós-Graduação em Biodiversidade Animal, Centro de Ciências Naturais e Exatas, Universidade Federal de Santa Maria (UFSM), Santa Maria, Brazil.
- 4. Maria Nazareth Ferreira Da Silva, & Mario Da Silva Nunes, & Programa de Pós-graduação em Zoologia, Instituto de Biociências, Universidade Federal de Mato Grosso (UFMT), Cuiabá, Brazil.
- 5. Ana Cristina Mendes-Oliveira, & Laboratório de Evolução e Genética Animal (LEGAL), Departamento de Genética, Universidade Federal do Amazonas (UFAM), Manaus, Brazil.
- 6. Izeni Pires Farias, & Instituto de Ciências Biológicas - LABEV, Universidade Federal do Pará (UFPA), Belém, Brazil.
Description
Semedo, Thiago Borges Fernandes, Silva, Maria Nazareth Ferreira Da, Gutiérrez, Eliécer E., Ferreira, Daniela Cristina, Nunes, Mario Da Silva, Mendes-Oliveira, Ana Cristina, Farias, Izeni Pires, Rossi, Rogério Vieira (2020): Systematics of Neotropical Spiny Mice, Genus Neacomys Thomas, 1900 (Rodentia: Cricetidae), from Southeastern Amazonia, with Descriptions of Three New Species. American Museum Novitates 2020 (3958): 1-43, DOI: 10.1206/3958.1, URL: http://dx.doi.org/10.1206/3958.1
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- urn:lsid:plazi.org:pub:FE7BFFEDFFDB3C17867EFFAFFFA2FFB0
- URL
- http://publication.plazi.org/id/FE7BFFEDFFDB3C17867EFFAFFFA2FFB0
References
- Aljanabi, S.M., and I. Martinez. 1997. Universal and rapid salt-extraction of high-quality genomic DNA for PCR-based techniques. Nucleic Acids Research 25: 4692-4693.
- Altekar, G., S. Dwarkadas, J.P. Huelsenbeck, and F. Ronquist. 2004. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
- Baker, R.J., and R.D. Bradley. 2006. Speciation in mammals and the genetic species concept. Journal of Mammalogy 87: 643-662.
- Brandao, M.B. et al. 2019. Mammals of Mato Grosso, Brazil: Annotated species list and historical review. Mastozoologia Neotropical, 26: 263-307.
- Cabrera, A. 1961. Catalogo de los mamiferos de America del Sur. Revista del Museo Argentino de Ciencias Naturales "Bernardino Rivadavia," Ciencias Zoologicas 42: xxii + 309-732.
- Carleton, M.D., and G.G. Musser. 1989. Systematic studies of oryzomine rodents (Muridae, Sigmodontinae): a synopsis of Microryzomy s. Bulletin of the American Museum of Natural History 191: 1-83.
- Carleton, M.D., and S.L. Olson. 1999. Amerigo Vespucci and the rat of Fernando de Noronha: a new genus and species of Rodentia (Muridae: Sigmodontinae) from a volcanic island off Brazil's continental shelf. American Museum Novitates 3256: 1-59.
- Catzeflis, F., and M. Tilak. 2009. Molecular systematic of Neotropical spiny mice (Neacomys: Sigmodontinae, Rodentia) from the Guianan Region. Mammalia 73: 239-247.
- Di-Nizo, C.B., K.R.S. Banci, Y. Sato-Kuwabara, and M.J.J. Silva. 2017. Advances in cytogenetics of Brazilian rodents: cytotaxonomy, chromosome evolution and new karyotypic data. Comparative Cytogenetics 11:833-89.
- Fearnside, P.M. 1989. The charcoal of Carajas: Pig-iron smelting threatens the forests of Brazil's Eastern Amazon Region. Ambio, 18: 141-143.
- Fearnside, P.M. 2005. Deforestation in Brazilian Amazonia: History, rates and consequences. Conservation Biology, 19: 680-688.
- Flores, T., R.V. Rossi, and I. Sampaio. 2010. Morphological and molecular diversity in the species of Oecomys Thomas, 1906 (Rodentia: Cricetidae) from eastern Amazon in Brazil. Master's thesis, Museu Paraense Emilio Goeldi, Belem, Para.
- Gardner, A.L. (editor). 2008 ("2007"). Mammals of South America, Vol. I: Marsupials, xenarthrans, shrews, and bats. Chicago: University of Chicago Press.
- Gascon, C., Bierregaard, Jr., Laurance R.O. and J, rankin-de-merona. 2001. Deforestation and forest fragmentation in the Amazon. In R.O. Bierregaard Jr, C. Gascon, T.E. Lovejoy, and R. Mesquita (editors), Lessons from Amazonia: 22-30. The ecology and conservation of a fragmented forest. New Haven, CT: Yale University Press.
- Guindon, S., et al. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307-321.
- Hershkovitz, P. 1940. Four new oryzomyine rodents from Ecuador. Journal of Mammalogy 21: 78-84.
- Huelsenbeck, J.P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
- Hurtado, N., and V. Pacheco. 2017. Revision of Neacomys spinosus (Thomas, 1882) (Rodentia: Cricetidae) with emphasis on Peruvian populations and the description of a new species. Zootaxa 4242: 401- 440.
- Lanfear, R., P.B. Frandsen, A.M. Wright., T. Senfeld, and B. Calcott. 2017. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34: 772-773.
- Miller, M.A., W. Pfeiffer, and T. Schwartz. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. Proceedings of the 2010 Gateway Computing Environments Workshop (GCE). [doi: 10.1109/GCE.2010.5676129]
- Musser, G.G., and M.D. Carleton. 2005. Superfamily Muroidea. In D.E. Wilson, and D.M. Reeder (editors), Mammals species of the world, a taxonomic and geographic reference: 894-1531. Baltimore: Johns Hopkins University Press.
- Oliveira da Silva, W., et al. 2017. Chromosomal diversity and molecular divergence among three undescribed species of Neacomys (Rodentia, Sigmodontinae) separated by Amazonian rivers. PLoS ONE 12: 1-19.
- Oliveira da Silva, W., et al. 2019. Chromosomal phylogeny and comparative chromosome painting among Neacomys species (Rodentia, Sigmodontinae) from eastern Amazonia. Bmc Evolutionary Biology 19: 1-13.
- Patton, J.L., M.N.F. da Silva, and J.R. Malcolm. 2000. Mammals of the rio Jurua and the evolutionary and ecological diversification of Amazonia. Bulletin of the American Museum of Natural History 244: 1-306.
- Patton, J.L., U.F.J. Pardinas, and G. D'Elia. 2015. Mammals of South America, vol. 2: Rodents. Chicago: University of Chicago Press.
- Paynter, R.A., Jr. 1993. Ornithological gazetteer of Ecuador. Cambridge, MA: Museum of Comparative Zoology (Harvard University).
- Paynter, R.A., Jr., and M.L. Traylor, Jr. 1991. Ornithological gazetteer of Brazil [2 vols.]. Cambridge, MA: Museum of Comparative Zoology (Harvard University).
- Percequillo, A.R., M. Weksler, and L.P. Costa. 2011. A new genus and species of rodent from the Brazilian Atlantic Forest (Rodentia: Cricetidae: Sigmodontinae: Oryzomyini), with comments on oryzomyine biogeography. Zoological Journal of the Linnean Society 161: 357-390.
- Prado, J.R., and A.R. Percequillo. 2013. On the geographic distribution of the genera of tribe Oryzomyini on South America, with some comments on the patterns of diversity and Reig's areas of original differentiation. Arquivos de Zoologia 44: 1-124.
- Ronquist, F., and J.P. Huelsenbeck. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
- Ronquist, F., et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542.
- Sanchez-Vendizu, P., V. Pacheco and D. Vivas-Ruiz. 2018. An introduction to the systematics of smallbodied Neacomys (Rodentia: Cricetidae) from Peru with descriptions of two new species. American Museum Novitates 3913: 1-38.
- Silva, J.M.C., A.B. Rylands and G.A.B. Fonseca 2005. O destino das areas de endemismo da Amazonia. Megadiversidade 1: 124-131.
- Silva, W.O., et al. 2015. Diversity and karyotypic evolution in the genus Neacomys (Rodentia, Sigmodontinae). Cytogenetic and Genome Research 146: 1-10.
- Smith, M.F., and J.L. Patton. 1993. The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for akodontine tribe. Biological Journal of Linnean Society 50: 149-177.
- Steppan, S.J. 1995. Revision of the tribe Phyllotini (Rodentia: Sigmodontinae), with a phylogenetic hypothesis for the Sigmodontinae. Fieldiana Zoology (New Series) 80: 1-112.
- Tamura, K., et al. 2011. MEGA6: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
- Thompson, J.D., D.G. Higginsand, and T.J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
- Voss, R.S. 1988. Systematics and ecology of ichthyomyine rodents (Muroidea): patterns of morphological evolution in a small adaptive radiation. Bulletin of the American Museum of Natural History 188 (2): 259-493.
- Voss, R.S. 1991. An introduction to the Neotropical muroid rodent genus Zygodontomys. Bulletin of the American Museum of Natural History 210: 1-113.
- Voss, R.S., and M.D. Carleton. 1993. A new genus for Hesperomys molitor Winge and Holochilus magnus Hershkovitz (Mammalia, Muridae) with an analysis of its phylogenetic relationships. American Museum Novitates 3085: 1-39.
- Voss, R.S., D.P. Lunde, and N.B. Simmons. 2001. The mammals of Paracou, French Guiana: a Neotropical lowland rainforest fauna. Part 2. Nonvolant species. Bulletin of the American Museum of Natural History 263: 1-236.
- Weksler, M. 2003. Phylogeny of Neotropical oryzomyine rodents (Muridae: Sigmodontinae) based on the nuclear IRBP exon. Molecular Phylogenetics and Evolution 29: 331-349.
- Weksler, M. 2006. Phylogenetic relationships of oryzomyine rodents (Muridae: Sigmodontinae): separate and combined analyses of morphological and molecular data. Bulletin of the American Museum of Natural History 296: 1-149.
- Weksler, M., and C. Bonvicino. 2015. Genus Neacomys Thomas, 1900. In J.L. Patton, U.F.J. Pardinas, and G. D'Elia (editors), Mammals of South America. Chicago: University of Chicago Press.
- Woodman, N., et al. 1991. Annotated checklist of the mammals of Cuzco Amazonico, Peru. Occasional Papers of the Museum of Natural History University of Kansas 145:1-12.
- Zwickl, D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, University of Texas at Austin, Austin.