Published June 23, 2021
| Version 2.0.0
Other
Open
Databases released with SAMSA2
Creators
- 1. University of California, Davis
- 2. USDA ARS Western Human Nutrition Research Center
Description
SAMSA2: a standalone metatranscriptomics pipeline can be run with the databases in this release. See: SAMSA2 paper
Databases released for use with SAMSA2, each compressed with bzip2, include
SEED Subsystems database in Fasta format Sept 22, 2017, subsys_db.fa.bz2
DIAMOND version of SEED Subsystems database Sept 22, 2017, subsys_db.fa.bz2
RefSeq bacterial sequences in Fasta format, Sept 26, 2017, RefSeq_bac.fa.bz2
DIAMOND version of RefSeq bacterial sequences, Sept 26, 2017, RefSeq_bac.dmnd.bz2
Files
Files
(27.9 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:fd2eb77186f9bea8d4c945d4628643f7
|
12.3 GB | Download |
|
md5:82e4ec65a6a92d55692c0f6698a50038
|
12.3 GB | Download |
|
md5:845f82f6c01a14942875c2e540aa73d4
|
1.7 GB | Download |
|
md5:5943d6ee8dc8c499cc3ad7daec08a705
|
1.7 GB | Download |
Additional details
Related works
- Is supplement to
- Journal article: 29783945 (PMID)