ncsu-landscape-dynamics/rpops: PoPS 1.1.0
- 1. NC State University
- 2. North Carolina State University
Description
Added
New dispersal kernels added: Uniform, Power-law, Deterministic neighbor, Hyperbolic-Secant, Gamma, Weibull, Normal, and Logistic (@ChrisJones687, #73).
- These kernels are usable for both (
natural_dispersal_kernel
,anthropogenic_dispersal_kernel
). - Used in the following functions (
pops
,pops_multirun
,auto_manage
,calibrate
, andvalidate
).
- These kernels are usable for both (
Overpopulation module added to pops-core (@wenzeslaus, #83).
Spatial Index to increase computational speed (@ChrisJones, #67)
Exposed and Infected populations can both be present at the start of a simulation (@ChrisJones687, #92).
Internal functions for data handling have switched from the raster package to the terra package (@ChrisJones687, #79).
- Adds terra dependency.
- Greatly speeds up data handling and preparation.
Mask parameter now used in pops-multirun for post processing data for visualization (@ChrisJones687, #104).
Calibration function now takes verbose parameter (@nfkruska, #99).
All functions now support vrt data types (@ChrisJones687, #97).
Raster files can now be read from S3 buckets (@chrisJones687, #75).
- needed for model-api for dashboard
Outputs can now be saved with
write_outputs
andoutput_folder_path
parameters (@ChrisJones687, #111).Host map now used as initial mask for post processing and validation calculations (@ChrisJones687, #112).
Movements now moves exposed, resistant, and mortality tracked populations (@ChrisJones687, #118).
Mortality can now occur at various timesteps not just yearly (@ChrisJones687, #118).
- Can be either "day", "week", "month", "year", or "every_n_steps".
- adds parameters
mortality_frequency
andmortality_frequency_n
.
Validation now exports the statistics for each output and the cumulative statistics for each year (@ChrisJones687, #121).
Treatments now update total_hosts (@ChrisJones687, #122)
Files
ncsu-landscape-dynamics/rpops-1.1.0.zip
Files
(52.0 MB)
Name | Size | Download all |
---|---|---|
md5:e97263ddcb60ff45c3963f0eefa62118
|
52.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ncsu-landscape-dynamics/rpops/tree/1.1.0 (URL)