Published June 16, 2021 | Version v0.1
Dataset Open

ATOM3D: Mutation Stability Prediction (MSP) Dataset

Creators

  • 1. Stanford University
  • 2. University of Chicago

Description

Mutation Stability Prediction (MSP) dataset from the ATOM3D project. This upload includes three zipped data directories:

  1. Full, unsplit dataset in LMDB format
  2. Split datasets, with each in LMDB format
  3. Text files containing train, validation, and test indices used to split raw dataset
  4. README containing dataset details

Files

README.md

Files (2.8 GB)

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md5:77aeb79cfc80bd51cdfb2aa321bf6128
1.4 GB Download
md5:868abd1be0d9a32cb614951f3d8297af
9.6 kB Download
md5:6628e8efac12648d3b78bb0fc0d8860c
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md5:1b66a04f42609c07485de669477dd5bd
2.1 kB Preview Download

Additional details

References

  • Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
  • Jankauskaite, J., Jiménez-García, B., et al. (2019). Bioinformatics, 35(3), 462–469.