Dataset Open Access
ATOM3D: Mutation Stability Prediction (MSP) Dataset
Townshend, Raphael J.L.;
Vögele, Martin;
Suriana, Patricia;
Derry, Alexander;
Powers, Alexander;
Laloudakis, Yianni;
Balachandar, Sidhika;
Anderson, Brandon;
Eismann, Stephan;
Kondor, Risi;
Altman, Russ B.;
Dror, Ron O.
Mutation Stability Prediction (MSP) dataset from the ATOM3D project. This upload includes three zipped data directories:
- Full, unsplit dataset in LMDB format
- Split datasets, with each in LMDB format
- Text files containing train, validation, and test indices used to split raw dataset
- README containing dataset details
Files
(2.8 GB)
| Name | Size | |
|---|---|---|
|
MSP-raw.tar.gz
md5:77aeb79cfc80bd51cdfb2aa321bf6128 |
1.4 GB | Download |
|
MSP-split-by-sequence-identity-30-indices.tar.gz
md5:868abd1be0d9a32cb614951f3d8297af |
9.6 kB | Download |
|
MSP-split-by-sequence-identity-30.tar.gz
md5:6628e8efac12648d3b78bb0fc0d8860c |
1.4 GB | Download |
|
README.md
md5:1b66a04f42609c07485de669477dd5bd |
2.1 kB | Download |
Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
Jankauskaite, J., Jiménez-García, B., et al. (2019). Bioinformatics, 35(3), 462–469.
363
446
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 363 | 363 |
| Downloads | 446 | 446 |
| Data volume | 483.0 GB | 483.0 GB |
| Unique views | 335 | 335 |
| Unique downloads | 246 | 246 |
Indexed in
- Publication date:
- June 16, 2021
- DOI:
-
- Keyword(s):
- protein stability structural biology machine learning
- License (for files):
- Creative Commons Attribution 4.0 International