Dryad
Published October 28, 2015 | Version v1
Dataset Open

Data from: "Transcriptomic resources for Hazelnut tree (Corylus avellana L.)" in Genomic Resources Notes Accepted 1 August 2015 to 31 September 2015

Creators

  • 1. French National Institute for Agricultural Research
  • 2. University of Lorraine

Description

This article documents the public availability of transcriptome sequence data, assembled contigs, annotated contigs and molecular markers for Hazelnut tree (Corylus avellana).

Notes

Functionally annotated Corylus assembly
This file lists all 13,690 Coryllus avellana contigs with their annotation. We considered, for each contig (col 1), the best blast hit found in the Swissprot database (col2) and in the Non-redundant nucleotide database (col3). We associated to these contigs GO terms. GO terms IDs are listed in col4 and GO terms definition is listed in col 5 (MF: Molecular function; CC: Cellular component; BP: Biological process).
corylus_assembly_with_ALL_funcat_final.txt
Corylus avellana CAV2 transcriptomic assembly
In this file, the 13,690 CAV2 contigs sequences are listed in fasta format.
corylus_CLCBIO_meta_assembly_cdhitest_0.95.fasta
C. avellana root and ECM-root sequences with T. melanosporum similarity
Root ("Root_" prefix) and ECM-roots ("ECM_Roots_" prefix) sequences (col 1) showing similarities with the Tuber melanosporum genome are listed in this file. Each Corylus read is associated with at least one T. melanosporum scaffold (col2).
Hazel_Root_ECM_454reads_with_Tuber_hits.csv
Mapping of the Corylus avellana input sequences against the CAV2 assembly.
Alignments of the 836,641 Corylus avellana Roche sequences against the 13,690 CAV2 contigs in bam format.
mapping_all_454_renamed_on_CLCBIO_assembly.bam

Files

corylus_assembly_with_ALL_funcat_final.txt

Files (55.7 MB)

Name Size Download all
md5:a78f2791606828eace11693cee9291bf
2.2 MB Preview Download
md5:e93c7044e8a1d3e82cd87d2d690a9306
17.0 MB Download
md5:75629cb1dc3599127453153229aca7bd
1.8 MB Preview Download
md5:7422e25425c932e44294ad0d241f717f
34.7 MB Download

Additional details

Related works

Is cited by
10.1111/1755-0998.12482 (DOI)