snpQT reference data

This dataset is a collection of other publicly available data, formatted for use with the snpQT pipeline, including:

• An extra filtered 1,000 genome project plink2 dataset initially  downloaded from (http://dx.doi.org/10.5524/100516) for population stratification
• EBI's latest release of 1,000 human genome VCF files for imputation and phasing (along with index files)
• Reference FASTA, VCF and chain files for fixing strand issues, imputation, phasing and human genome build conversion
• A TXT file including the high linkage disequilibrium regions in the human genome in hg37
• Auxiliary TXT files for intermediate snpQT processes