Published June 7, 2021
| Version v4.1.2
Software
Open
dib-lab/sourmash: v4.1.2
Creators
- C. Titus Brown1
- Luiz Irber2
- Laurent Gautier
- Tim Head3
- Keya Barve
- Olga Botvinnik4
- Erik Young
- Connor Tiffany
- Pranathi Vemuri5
- Taylor Reiter1
- Tessa Pierce Ward
- swamidass
- Phillip Brooks
- Hannah Eve Houts
- Daniel Standage
- Camille Scott6
- Harriet Alexander
- Mohamed Abuelanin1
- Abhishek Anant
- Andreas Sjödin
- Arfon Smith7
- Connor T. Skennerton
- Daniel Dsouza8
- Fabian Klötzl9
- Ivan Ogasawara10
- Katrin Leinweber11
- Marisa Lim12
- Nick
- 1. University of California, Davis
- 2. @dib-lab - @ucdavis
- 3. @BlockSigner
- 4. @czbiohub
- 5. CZ BioHub
- 6. @dib-lab
- 7. @github
- 8. @pqdev
- 9. Profile picture credit goes to XKCD
- 10. xmnlab
- 11. @gitlabhq
- 12. UC Davis
Description
This is a bug-fix and performance release of sourmash.
There are no major new features.
Minor new features:
- add query info to gather CSV output (#1565)
Bug fixes and performance improvements:
- Improved
MinHash.remove_many(...)performance by five orders of magnitude (#1571) - Fix SBT index saving bug that arbitrarily replaced names (but not content) of identical signatures in
.sbt.zipfiles (#1568) - Empty zipfiles should not cause
AssertionError(https://github.com/dib-lab/sourmash/pull/1546)
Major refactoring and new internal functionality:
- update
MinHash.set_abundancesto remove hash if 0 abund; handle negative abundances (#1575)
Refactoring and cleanup:
- Fix tests that fail to close files that they open (#1550)
- Add "&" and " | " as alternate syntax for MinHash intersection merge (#1533)
- Fix missing bracket in docs (#1566)
- Updates for coverage tracking (#1558)
- Provide a .copy() method for both
SourmashSignature()andMinHash(#1551, #1570)
Files
dib-lab/sourmash-v4.1.2.zip
Files
(19.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:9303d7879fc1847a8cd72f926c921a0b
|
19.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/dib-lab/sourmash/tree/v4.1.2 (URL)