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Published June 7, 2020 | Version 2
Software Open

Gastruloid Intensity Profiler Vianello Lutolf

Description

Python jupyter notebook guiding the user through a pipeline to quantify immunostaining signal intensity along the anterior-posterio axis of Gastruloids (3D aggregates of mouse embryonic stem cells). 

Updated version (v2): added function to fit a polynomial curve, and to represent the results in a linearised heatmap version. Also added code for easier customisation of colours/background of the plots.

Files

Gastruloid Intensity Profiler_CODE_v2.ipynb

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