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Journal article Open Access

Anti-clustering in the national SARS-CoV-2 daily infection counts

Roukema, Boudewijn F.

Produced and source files for "Anti-clustering in the national SARS-CoV-2 daily infection counts", 2021, PeerJ, in press, by B. F. Roukema

  • subpoisson-72242ca.pdf - article in pdf format
  • WP_C19CCTF_SARSCoV2.dat - Wikipedia COVID-19 Case Count Task Force (C19CCTF) medical cases chart data on national daily SARS-CoV-2 infections in csv format; URLs of the specific versions of the source pages are included
  • WHO_vs_WP_jumps.dat - plain text table comparing jumpiness of WHO to C19CCTF national case count data
  • phi_N_full.dat - results: clustering parameter phi_i for full national daily infection counts above a threshold of 50 per day
  • phi_N_28days.dat - as for phi_N_full.dat, for the least noisy 28-day subsequence for each country
  • phi_N_14days.dat - as for phi_N_28days.dat, for 14-day subsequences
  • phi_N_07days.dat - as for phi_N_28days.dat, for 7-day subsequences
  • AIC_BIC_full.dat - Akaike and Bayesian information criteria for primary and alternative analyses
  • pfi_correlations_table.dat - Kendall tau statistic and its significance for non-parametric ranked correlation between clustering parameters and the Reporters sans frontières Press Freedom Index
  • six files *_jhu.dat which are equivalent to the main tables, but for the JHU CSSE data, as listed in the appendix of the article
  • subpoisson-72242ca-git.bundle - git source package that can be unbundled with 'git clone subpoisson-72242ca-git.bundle' and used for reproducibility: to download data, do calculations, analyse them, plot them and produce the article pdf
  • subpoisson-72242ca-journal.tar.gz - source package for producing the article pdf, together with the reproducibility package, but without the git history; appropriate for ArXiv
  • software-72242ca.tar.gz - this should contain all the software sources, apart from a minimal POSIX-compatible system, needed for compiling and installing the software used in producing this paper (big file)

Associated resources:

All the materials here are free-licensed, as stated in the individual files and packages.

Clarification of IDs in data files: The files in Zenodo record 4765705 correctly state in their headers that they were calculated using git commit 27ac91a. However, they incorrectly state the older Zenodo ID 4432080 instead of 4765705.

Files (545.6 MB)
Name Size
AIC_BIC_full.dat
md5:ca5faaea5f2424c62772752360ddcf9e
1.3 kB Download
AIC_BIC_full_jhu.dat
md5:4fc4b2dfc8ee616bccf287b9f58785f2
1.3 kB Download
pfi_correlations_table.dat
md5:7b077315ea134448885220e36370cfc8
1.3 kB Download
pfi_correlations_table_jhu.dat
md5:19c88028272493a92a8048e35262468f
1.3 kB Download
phi_N_07days.dat
md5:b28cefbfaf5bedcec71f384ea4f1d06e
8.1 kB Download
phi_N_07days_jhu.dat
md5:a6e3ce3753e37d4f41d35065749478d8
8.3 kB Download
phi_N_14days.dat
md5:7ec0e7ec4302f2f8fa886a3870ab57a7
8.1 kB Download
phi_N_14days_jhu.dat
md5:ac12267185197d6209c46575c193e2aa
8.3 kB Download
phi_N_28days.dat
md5:5a5d6a2bffa69b525e33c57dc91e18d8
8.1 kB Download
phi_N_28days_jhu.dat
md5:1068d73d541eabf1c60bd5bb7842d0a1
8.3 kB Download
phi_N_full.dat
md5:7efbb1c5c06c91cfa4dee0be7b0f6578
17.9 kB Download
phi_N_full_jhu.dat
md5:56fbac777afc593f0394a7278260a18c
18.3 kB Download
software-72242ca.tar.gz
md5:34b6767ef8439f15bffa5ecd73f102e4
537.9 MB Download
subpoisson-72242ca-git.bundle
md5:0e0c359069ab8a7827f057647935ca21
5.8 MB Download
subpoisson-72242ca-journal.tar.gz
md5:1b5cb369239015d987e91338822871df
232.7 kB Download
subpoisson-72242ca.pdf
md5:0d64fe4920054043f7223ba422ad3d33
680.2 kB Download
WHO_vs_WP_jumps.dat
md5:1f4c5b0cd21028d3a02d9376013edc5e
2.8 kB Download
WP_C19CCTF_SARSCoV2.dat
md5:8da4edb6bd266384e7d9b0937e4d74b7
876.1 kB Download
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