Neurosim-lab/netpyne: v1.0.0
Creators
- Salvador Dura-Bernal
- Joe Graham1
- Padraig Gleeson2
- ericaygriffith
- Adrian Quintana3
- jjcarre
- Cliff Kerr4
- William Lytton5
- David Kedziora
- barefoothiker
- kelley92
- Ariel Alejandro Brassesco
- Matteo Cantarelli6
- jchen6727
- Afonso Pinto7
- Sam Neymotin8
- campbell-mclauchlan
- Daniel Hasegan9
- Facu
- Gil Lee
- adamjhn
- Blake Caldwell
- Eric Thomson10
- IPSIA
- FernandoSBorges
- Lucas11
- Tom Morse12
- 1. @Neurosim-lab
- 2. University College London
- 3. @EyeSeeTea
- 4. Institute for Disease Modeling
- 5. SUNY Downstate
- 6. @MetaCell @openworm
- 7. @MetaCell
- 8. Nathan Kline Institute
- 9. Braid Health
- 10. NIH Bioinformatics Scientist
- 11. Freelance
- 12. Yale
Description
Version 1.0.0 New features
Added wrapper for distributed saving; can now simply replace 'sim.gatherData()' with 'sim.gatherDataFromNodes()'
Added distributed saving/loading ability (save/load data by MPI node)
Allowed to specify 'cellModel' and point neuron params in netParams.cellParams (not only in netParams.popParams)
Added cellsVisualizationSpacingMultiplier property to netParams
Improved Granger plot, renamed it plotGranger
Added interactive Granger plot (iplotGranger)
Implemented testing in GitHub Actions with pytest (thanks Daniel!)
Improved sim.clearAll such that it works even before a sim is run
Properly formatted all module docstrings
Fixed bug in TupleToStr function
Fixed broken links in tutorials
Bokeh update required changing options from None to 'auto'
Files
Neurosim-lab/netpyne-v1.0.0.zip
Files
(26.5 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/Neurosim-lab/netpyne/tree/v1.0.0 (URL)