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Published May 10, 2021 | Version 0.10.15
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ICB-DCM/pyABC: pyABC 0.10.15

  • 1. Helmholtz Munich + TUM
  • 2. IRU Biomathematics @ Uni Bonn
  • 3. CRTD, TU Dresden

Description

Sampler:

  • Allow redis dynamical sampler to only wait for relevant particles after a generatio, giving a speed-up without drawbacks (#448)
  • Add option to limit number of delayed look-ahead samples to limit memory usage (#428)

Logging:

  • Standardize output of floats (#450)
  • Use hierarchical logging (ABC.Submodule) (#417)

General:

  • Refactor: Remove deprecated nr_samples_per_parameter, internal simplifications (#422)
  • Tidy up and minimize dependencies (#436, #441)
  • External: Remove simulation files after collecting results (#434)
  • Make feather/pyarrow dependency optional for older hardware (#442)

Documentation:

  • Add description of JupyterHub to documentation (#439)

CI:

  • Test webserver basic functionality
  • Rerun stochastically failing tests (all #436)
  • Test whether dataframe storage routines work properly (#442)

Files

ICB-DCM/pyABC-0.10.15.zip

Files (19.5 MB)

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Additional details

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