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WU-BIMAC/NBOMicroscopyMetadataSpecs: 4DN-BINA-OME (NBO) Microscopy Metadata Specifications

Alessandro Rigano; Ulrike Boehm; James J. Chambers; Nathalie Gaudreault; Alison J. North; Jaime A. Pimentel; Damir Sudar; Peter Bajcsy; Claire M. Brown; Alexander D. Corbett; Orestis Faklaris; Judith Lacoste; Alex Laude; Glyn Nelson; Roland Nitschke; David Grunwald; Caterina Strambio-De-Castillia

Note: v2.01 is a minor release that corrects minor errors that were found in v2.00.

4DN-BINA-OME (NBO) Microscopy Metadata Specifications v2.0 is the result of a proposal put forth by the 4D Nucleome (4DN) Imaging Standards Working Group and by the Bioimaging North America (BINA) Quality Control and Data Management Working Group (QC-DM-WG) for a suite of tiered Microscopy Metadata Specifications that extend the October 2016 version of the OME Data Model schema.

v2.0 supersedes and replaces v1.07 of the guidelines, which were called Microscopy Metadata 4DN Guidelines.

The next version of the NBO Microscopy Metadata Specifications will be released as part of a community outreach effort conducted in collaboration with the Quality Assessment and Reproducibility for Light Microscopy (QUAREP-LiMi) initiative.

Development continues! Everyone is encouraged to contribute to the next release v02-10 draft of the specifications.

Click here for a shortcut to the model directory. To create an issue, click on Issues, the "New Issue" button, and select whether you are submitting a proposed new feature/element or want to propose a change to elements of the current proposal.

Additional support: -- NSF grant #1917206 to D.G.; -- Chan Zuckerberg Initiative DAF (Silicon Valley Community Foundation) grant #2019-198155 (5022) awarded to C.S.D.C. as part of the Imaging Scientist Program. -- Chan Zuckerberg Initiative DAF (Silicon Valley Community Foundation) grant ##2020-225398 awarded to C.M.B. as part of the Imaging Scientist Program. - Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) grant number Ni 451/9-1 MIAP-Freiburg, to R.N.
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Publication date:
April 22, 2021
DOI:
10.5281/zenodo.4710731

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Keyword(s):
Imaging microscopy metadata quality control calibration standards data-formats reproducibility open microscopy
Grants:
National Institutes of Health:
  • 4D Nucleome Network Data Coordination and Integration Center (5U01CA200059-03)
  • Visualizing local and global chromatin architecture, and gene expression in the individual cell by structural (SUSHI) and temporal (3D-SMRT) single molecule imaging (1U01EB021238-01)
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Version v02.01 10.5281/zenodo.4710731 Apr 22, 2021
Version v2.00 10.5281/zenodo.4682257 Apr 14, 2021
Version v2.00 10.5281/zenodo.4671034 Apr 7, 2021
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