Dataset Open Access
miRNA target finder training datasets
Gallardo-Alba, Cristóbal
Datasets needed to run the Galaxy training: miRNA target finder in Arabidopsis thaliana
Park, S. Y., Choi, J. H., Oh, D. H., Johnson, J. C., Dassanayake, M., Jeong, D. H., & Oh, M. H. (2020). Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics, 42(8), 957-969.
Oh, Eunkyoo, et al. "Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl." elife 3 (2014): e03031.
Zhang, R., Calixto, C.P.G., Marquez, Y., Venhuizen, P., Tzioutziou, N.A., Guo, W., Spensley, M., Frei dit Frey, N., Hirt, H., James, A.B., Nimmo, H.G., Barta, A., Kalyna, M., Brown, J.W.S (2016) AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data. bioRxiv doi: http://dx.doi.org/10.1101/051938
PmiREN: a comprehensive encyclopedia of plant miRNAs. Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao, C Cheng, J Yang, X Lu, C Hao, T Wang, X Cao, J Wei, L Li, and X Yang. Nucleic Acids Res. 2019. doi: 10.1093/nar/gkz894.
Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., ... & Huala, E. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic acids research, 40(D1), D1202-D1210.
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| Downloads | 6,738 | 5,658 |
| Data volume | 316.7 GB | 260.2 GB |
| Unique views | 418 | 250 |
| Unique downloads | 1,066 | 792 |
- Publication date:
- March 15, 2021
- DOI:
-
- Keyword(s):
- miRNA, BR, arabidopsis, plant, rna-seq, mirna-seq
- Related identifiers:
- Has part
- 10.1007/s13258-020-00964-2 (Dataset)
- 10.7554/eLife.03031 (Dataset)
- 10.1101/051938 (Dataset)
- 10.1093/nar/gkz894 (Dataset)
- 10.1093/nar/gkr1090 (Dataset)
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International