callahantiff/PheKnowLator: V2.1.0

Release: v2.1.0

Website: https://github.com/callahantiff/PheKnowLator/wiki/v2.0.0 Data Access: Google Cloud Storage -- PheKnowLator Bucket Docker Container: DockerHub Dedicated Project Container PyPI: pkt-kg 2.1.0

New Jupyter Notebooks:

• RDF_Graph_Processing_Example.ipynb
• OWLNETS_Example_Application.ipynb

• Parallelize edge_list.py, knowledge_graph.py, and owlnets.py using ray
• Moderate updates to the logic for how non-ontology data are added to the merged set of base ontologies. Please see the resources/consrtuction_approach/README.md for additional details and updated examples.
• New functionality added for splitting the logical core of a graph from its annotation assertions.
• Changed the output files: no longer generating .owl files.
• Cleaned up OWL-NETS helper functions and modified the logic for filtering OWL-specific annotations and axioms. Also added logic to enforce that the OWL-NETS graphs are all a single connected component.
• Added more extensive statistics to logging and which print during the run-time.
• Adding arguments for progress/logging verbosity.
• New method added for better load balancing when input into Ray

Graph Build Statistics:

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Maximum Memory Use (GiB):

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Runtime (minutes):