SPAAM-community/AncientMetagenomeDir: v21.03: Torn of Provins

Release Description

Third major release of AncientMetagenomeDir.

Release v21.03 includes 8 new publications, representing 228 new ancient host-associated metagenome samples, 3 new ancient microbial genomes and 14 new ancient environmental samples.

This brings the repository to a total of 774 ancient host-associated metagenome samples, and 322 ancient microbial genomes and 352 ancient environmental samples.

Corrections were made to 4 publications. New functionality includes an interactive geoJSON map rendered on GitHub, which can be accessed here

The full changelog is below.

Added

• #348: Interactive GeoJSON maps rendered with GitHub
• #349: No spaces allowed in archive_accession column.

Ancient Metagenome: Host Associated

• Philips 2017 10.1186/s12864-020-06810-9
• Kazarina 2021 10.3390/genes12020309
• Seguin-Orlando 2021 10.1016/j.cub.2020.12.015
• Rampelli 2021 10.1038/s42003-021-01689-y
• Witt 2021 10.1038/s41598-021-82362-6

Ancient Single Genome: Host Associated

• Philips 2020 10.1186/s12864-020-06810-9
• Kılınç 2021 10.1126/sciadv.abc4587

Ancient Metagenome: Environmental

• Rampelli 2021 10.1038/s42003-021-01689-y

Ancient Metagenome: Anthropogenic Misc

• Added project accession column to all tables to help finding other samples from same project

Changed

• Cutibacterium acnes (deDios2020, 10.1016/j.meegid.2020.104209) changed from eukaryota to bacteria.
• Corrected publication_doi and sample_age_doi for Jacobson2020 (10.1098/rstb.2019.0586)
• Corrected overwritten new SRA information for Weyrich 2017 (10.1038/nature21674)
• Corrected date DOI spreadsheetdragging error for Armbrecht 2020 (10.1111/1755-0998.13162)

Removed Provins, Town of Medieval Fairs

The fortified medieval town of Provins is situated in the former territory of the powerful Counts of Champagne. It bears witness to early developments in the organization of international trading fairs and the wool industry. The urban structure of Provins, which was built specifically to host the fairs and related activities, has been well preserved.