Published March 17, 2021 | Version v1
Dataset Open

Mouse Grooming Detection Annotated Dataset

Creators

  • 1. The Jackson Laboratory

Description

This dataset contains 2 records. The first record is the annotated dataset. The second record contains a built singularity image containing the code and trained model for predicting on new videos.

We generated 1,253 video clips which total 2,637,363 frames. Each video had variable duration, depending upon the grooming prediction length. Annotators were required to provide a "Grooming" or "Not Grooming" annotation for each frame.
The annotated dataset is stored in the h5 record and is described as follows:

  • First level grouping is Train/Validation split
  • Second level grouping is by Video Clip
  • Each video contains 5 datasets
    • nframe
      • Number of frames in this video
      • Shape: 1
    • video
      • Raw Video
      • Shape: nframes x 112 x 112
    • label
      • Labels for each frame
        • 0 = not grooming, 1 = grooming
      • Shape: nframes
    • mask
      • Information for whether or not annotators agreed
        • 0 = disagree, 1 = agree
        • When annotators disagree, label contains the values from the first person to annotate the frame
      • Shape: nframes
    • nlabelers
      • Number of annotators that have labeled the video clip
      • Shape: 1 

Notes

Example usage of the trained model: singularity run –nv GroomingInferRelease.sif Input_Movie.avi The input movie must be a 480×480 video and appear visually similar to our training dataset. Since we do not employ distortion augmentation in this model, even slight differences in lighting can cause issues with performance.

Files

Files (35.7 GB)

Name Size Download all
md5:8b9a6b2132a99188ff9461d588d3e1d9
33.1 GB Download
md5:0b97bf5940fd9b64060c7187e40bca83
2.6 GB Download

Additional details

Related works

Is cited by
Journal article: 10.7554/eLife.63207 (DOI)