Multiplex amplicon sequencing dataset for genotyping pandemic populations of the wheat blast fungus
Creators
- Batiseba Tembo1
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Nur Uddin Mahmud2
- Sanjoy Kumar Paul2
-
Soichiro Asuke3
- Adeline Harant4
-
Thorsten Langner4
-
C. Sarai Reyes-Avila4
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Emilie Chanclud4
-
Vincent Were4
- Suwilanji Sichilima1
- Rabson M. Mulenga1
- Dipali Rani Gupta2
- Md. Shabab Mehebub2
- Abu Naim Md. Muzahid2
- . M. Fajle Rabby2
- Pawan K. Singh5
- Alison Bentley5
- Yukio Tosa3
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Daniel Croll6
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Kurt Lamour7
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Tofazzal Islam2
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Nicholas J. Talbot4
-
Sophien Kamoun4
-
Joe Win4
- 1. Zambia Agricultural Research Institute
- 2. Institute of Biotechnology and Genetic Engineering (IBGE), Bangladesh
- 3. Kobe University, Japan
- 4. The Sainsbury Laboratory, UK
- 5. International Maize and Wheat Improvement Center, CIMMYT, Mexico
- 6. University of Neuchâtel, Switzerland
- 7. University of Tennessee, Knoxville, United States of America
Description
We report genotyping data for 186 Magnaporthe oryzae (Syn. Pyricularia oryzae) isolates from different geographical regions obtained using multiplex amplicon sequencing. The dataset consists of 84 single nucleotide polymorphisms (SNPs) selected from transcript sequences to distinguish between the clonal lineage of the wheat blast fungus that emerged in South East Asia in 2016 and other M. oryzaegenotypes. The sample coverage includes pandemic wheat blast isolates from Bangladesh (N=75, 2016-2020) and the newly reported Zambian outbreak (N=13, 2018-2020). The dataset is provided as an open science resource as part of the OpenWheatBlast initiative. We welcome analyses and feedback from the community.
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Genotyping_wheatblast_SUBMITTED.pdf
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