Published March 2, 2021
| Version v1
Dataset
Open
Rcwl/RcwlPipelines workshop dataset for scRNA-seq pre-processing
Description
The scRNA-seq data source is the 1k PBMCs from 10x genomics (These source files are provided in the Zenodo data repository). The dataset used in this workshop are sub-sampled from the source files to contain only 15 cells instead of 1000. The data curation is for demo purpose only so that the execution of the Rcwl scRNA-seq preprocessing tools or pipeline in R can be completed within 1~2 minutes.
The "*.fastq" data was curated to only include reads on chromosome 21.
“subset15_demo_barcode.txt” contains known cell barcodes for mapping and only 15 barcodes are included.
"Homo_sapiens.GRCh37.75.21.gtf" contains the hg19 GTF file to annotate reads, which was curated on chromosome 21 only.
Files
subset15_demo_barcode.txt
Files
(63.9 MB)
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