Lesson Open Access
Training material for the mapping and quantification of single-cell RNA-seq 10X Datasets with RNA STAR Solo.
Tekman, Mehmet
The data provided here is part of the Galaxy Training Network tutorial that analyses 10x genomics single-cell RNA-seq data (scRNA) using cell barcodes and data from the 10x platform. This dataset of 1000 PBMC's from 10x
Due to time constraints during training, the datasets were subsampled in a method outlined in the subsetting_data.txt file.
The 10x Genomics Datasets follow the Creative Commons Attribution license, and the whitelist barcodes given in the CellRanger pipeline are distributed under the MIT license.
Files
(6.9 GB)
| Name | Size | |
|---|---|---|
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3M-february-2018.txt.gz
md5:eac3cdd869867e9e979d5da300a81823 |
18.4 MB | Download |
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737K-august-2016.txt
md5:f62a276e262fdd85262a889d0f48556b |
12.5 MB | Download |
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cellranger_mit_license.txt
md5:9a7c338387b3e44dc84167099e2cea59 |
1.2 kB | Download |
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Homo_sapiens.GRCh37.75.gtf
md5:1de18dd9077e0516b0ee756b0527f694 |
856.4 MB | Download |
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pbmc_1k_v3_S1_L001_I1_001.fastq.gz
md5:da50f219b3ea514107a1901169916efd |
255.9 MB | Download |
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pbmc_1k_v3_S1_L001_R1_001.fastq.gz
md5:99efcdb237fa13cc7f92e1d91718c692 |
753.9 MB | Download |
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pbmc_1k_v3_S1_L001_R2_001.fastq.gz
md5:e5cda97c012cfca47a43afdeb8e441ed |
1.8 GB | Download |
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pbmc_1k_v3_S1_L002_I1_001.fastq.gz
md5:17c48ffefc1582afeac23f06f6ad21f3 |
254.5 MB | Download |
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pbmc_1k_v3_S1_L002_R1_001.fastq.gz
md5:e2300973dd787cc0a29b036490978fa8 |
748.7 MB | Download |
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pbmc_1k_v3_S1_L002_R2_001.fastq.gz
md5:6b1e9d197dcf169d80d29b59c7254dbe |
1.8 GB | Download |
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subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz
md5:7b1eb908855832943c9dea36997c025d |
66.9 MB | Download |
|
subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz
md5:e841faf4b9d57eb63aad284b97353e40 |
168.3 MB | Download |
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subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz
md5:011a9d5926be3c143ea8916d70072245 |
74.9 MB | Download |
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subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz
md5:1ab1853b1f068ace8a7301b0c96a81a0 |
187.5 MB | Download |
|
subsetting_data.txt
md5:54a06f258abe1751a215bb7c83fa7da0 |
4.9 kB | Download |
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| All versions | This version | |
|---|---|---|
| Views | 6,820 | 6,308 |
| Downloads | 11,146 | 10,932 |
| Data volume | 1.9 TB | 1.8 TB |
| Unique views | 6,159 | 5,733 |
| Unique downloads | 6,457 | 6,347 |
Indexed in
- Publication date:
- September 1, 2019
- DOI:
-
- Keyword(s):
- single-cell RNA-seq scRNA Training Data 10X
- License (for files):
- Creative Commons Attribution 4.0 International