Transcriptome assemblies, gene alignments and phylogenetic trees supporting Brand et al. 2021. Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits
Creators
- 1. University of Basel, Department of Environmental Sciences, Zoological Institute, Vesalgasse 1, 4051 Basel, Switzerland
- 2. Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland
Description
The deposited folders contain results of the computations performed in:
Brand, J. N., G. Viktorin, R. A. W. Wiberg, C. Beisel, and L. Schärer. 2021. Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits.
Primer and noPrimer contain the alignments and transcriptomes, with and without the SMARTseq primers.
We recommend you only use the noPrimer data.
Naming follows the description in Brand et al. 2021.
fa: Trinity transcriptome assembly
pep: protein sequence predicted by TransDecoder
cds: coding sequence predicted by TransDecoder
The trees directory contains both ultrametric (UM) and non ultrametric species trees.
28S_C.aln: Alignment of 28S sequences used for the C-IQ-TREE phylogenetic inference.
28S_delim.aln: Aligment of 28S sequences used for species delimitation using haplotype networks (after filtering from missing data, 28S_delim_nogap.aln)
Files
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Additional details
Related works
- Is referenced by
- Preprint: 10.1101/2021.03.28.437366 (DOI)
Funding
- Sexual selection and sexual conflict in simultaneous hermaphrodites with divergent mating syndromes 310030_184916
- Swiss National Science Foundation
- Evolution of Sex Allocation and its Correlates in Simultaneous Hermaphrodites 31003A_162543
- Swiss National Science Foundation