Published January 8, 2021 | Version 1.0
Dataset Open

Microscope images of human cancer cell lines (U2OS and HL-60)

  • 1. Vrije Universiteit Amsterdam
  • 2. University of Amsterdam
  • 1. Vrije Universiteit Amsterdam
  • 2. University of Amsterdam

Description

This is a dataset that contains microscope images from two cell lines, namely, a human osteosarcoma cell line (U2OS) and a human leukemia cell line (HL-60). The dataset was originally prepared for the cell counting task. It contains 165 labeled images (training: 133, test: 32).

The file contains three folders:

- training: 165 labeled images in .tiff format;
- test: 32 labeled images in .tiff format.

Each labeled image has the following name: X.Y.N.tiff

where:
X - the name of the human cancer cell line;
Y - a condition identifier (irrelevant);
N - the cell count.


If you use this dataset, please cite the following paper:

  • Lavitt F, Rijlaarsdam DJ, van der Linden D, Weglarz-Tomczak E, Tomczak JM. Deep Learning and Transfer Learning for Automatic Cell Counting in Microscope Images of Human Cancer Cell Lines. Applied Sciences. 2021; 11(11):4912. https://doi.org/10.3390/app11114912

Notes

Contact person: Jakub M. Tomczak (jmk.tomczak@gmail.com) Funding: EWT was financed by a grant within Mobilnosc Plus V from the Polish Ministry of Science and Higher Education (Grant 1639/MOB/V/2017/0).

Files

cell-counter-data_U2OS_HL-60.zip

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