MetaMLST Databases

MetaMLST is a software tool that performs an in-silico Multi Locus Sequence Typing (MLST) analysis on metagenomic samples. MetaMLST achieves cultivation- and assembly- free strain level tracking. MetaMLST is able to detect and trace all the species to which the standard MLST protocol is applicable.

This repository contains the databases for MetaMLST, which is available at https://github.com/SegataLab/metamlst

Publication:

M. Zolfo, A. Tett, O. Jousson, C. Donati and N. Segata - MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples - Nucleic Acids Research, 2016 | DOI: 10.1093/nar/gkw837

This publication made use of the PubMLST website developed by Keith Jolley (Jolley et al. Wellcome Open Res 2018, 3:124) and sited at the University of Oxford. The development of that website was funded by the Wellcome Trust”