Dataset for a Mouse and Rat liver trancriptomic analysis

Data used for the anlaysis. R scripts used can be found on github: https://github.com/gdevailly/liver_mouse_rat

• matrixLiverMouse.txt and rat_full_data_matrix.txt contain GEO expression matrix for mouse and rat rexperiments.
• GSEmouse.txt and GSErat.txt contain experiment IDs from GEO and experiment titles.
• GEORat.txt and GEOMouse.txt contain experiment IDs and series IDs from GEO.
• quantNormData_mouse.tsv and quantNormData_rat.tsv contain normalised expression matrices.
• fileForSCHypeThreshold0.5.txt is the input for SCHype. schype_output_0.5th.nodes.txt and schype_output_0.5th.edges.txt are the outputs.
• mouse_rat_ampping.txt is the probe mapping used to compare mouse and rat data.
• geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)