There is a newer version of the record available.

Published December 9, 2020 | Version 2.2.2
Software Open

nf-core/eager: [2.2.2] - Ulm (Patch) - 2020-12-09

Creators

  • 1. Max Planck Institute for the Science of Human History
  • 2. Boehringer Ingelheim
  • 3. Max Planck institute for the Science of Human Evolution
  • 4. Seqera Labs and @nextflow-io
  • 5. @SciLifeLab | Karolinska Institutet
  • 6. @Gregor-Mendel-Institute
  • 7. Science for Life Laboratory
  • 8. @qbicsoftware
  • 9. The Francis Crick Institute
  • 10. @czbiohub
  • 11. MPI-SHH

Description

Added

  • Added large scale 'stress-test' profile for AWS (using de Barros Damgaard et al. 2018's 137 ancient human genomes).
    • This will now be run automatically for every release. All processed data will be available on the nf-core website: https://nf-co.re/eager/results
      • You can run this yourself using -profile test_full
Fixed
  • Fixed AWS full test profile.
  • #587 - Re-implemented AdapterRemovalFixPrefix for DeDup compatibility of including singletons
  • #602 - Added the newly available GATK 3.5 conda package.
  • #610 - Create bwa_index channel when specifying circularmapper as mapper
  • Updated template to nf-core/tools 1.12.1
  • General documentation improvements
Deprecated
  • Flag --gatk_ug_jar has now been removed as GATK 3.5 is now avaliable within the nf-core/eager software environment.

Files

nf-core/eager-2.2.2.zip

Files (14.8 MB)

Name Size Download all
md5:c301f9f4f046ffefa8993ccd0f581b24
14.8 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/nf-core/eager/tree/2.2.2 (URL)