Dataset Open Access

Dataset and code release for "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia"

Bar, Ido; Sambasivam, Prabhakaran Thanjavur; Davidson, Jenny; Farfan-Caceres, Lina M; Lee, Robert C; Hobson, Kristy; Moore, Kevin; Ford, Rebecca

This upload contains the raw DArTseq data and code for reproducible analysis and production of output tables and plots to accompany the publication "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia".
The analysis is performed primarily in R and is run using the `A_rabiei_DArT.R` file.

A version-controlled repository of this upload is maintained at GitHub at the following link: https://github.com/IdoBar/A_rabiei_DArT

The archived file is structured as follows:

  • Main analysis code is in A_rabiei_DArT.R
  • Raw DArTseq data and A. rabiei isolate metadata can be found in in the data folder
  • Output tables and plots in output folder
  • General information (partial and slightly outdated) in the markdown A_rabiei_DArT.Rmd and knitted A_rabiei_DArT.html files
  • Australian chickpea production stats and figures in Chickpea_production.R
Files (41.3 MB)
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A_rabiei_DArT.gz
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