Published November 16, 2020
| Version 2.4.0
Software
Open
maxplanck-ie/snakepipes: Release_2.4.0
Creators
- 1. Genedata AG
- 2. Hubrecht Institute
- 3. Max Planck Institute for Immunobiology and Epigenetics
- 4. remi.montagne@pasteur.fr
- 5. INRAE, IGEPP
Description
snakePipes 2.4.0
- Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in the mRNA-seq workflow, as well as for DESeq2 in the noncoding-RNA-seq workflow.
- Loompy from conda is now used in mode STARsolo in scRNA-seq workflow.
- Added bamExt to mRNA-seq and noncoding-RNA-seq commandline arguments.
- Added multi-thread support to rMats in mRNA-seq workflow.
- Fixed deepTools GC bias command with SE reads.
- Bumped HiC explorer version.
- Fixed STARsoloCoords for Custom kit.
Files
maxplanck-ie/snakepipes-2.4.0.zip
Files
(21.3 MB)
| Name | Size | Download all |
|---|---|---|
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md5:99919f3a8b156e51e285f3c12e488823
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21.3 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/maxplanck-ie/snakepipes/tree/2.4.0 (URL)