HGSVC Key Callset Resources

Variant callset resources for the Human Genome Structural Variant Consortium (HGSVC).

1. SV INS/DEL: variants_freeze3_sv_insdel.tsv.gz
2. SV INV: variants_freeze3inv_sv_inv.tsv.gz
3. Indel: variants_freeze3_indel_insdel.tsv.gz
4. SNV: variants_freeze3_snv_snv.tsv.gz

For each sample, Strand-seq-phased assemblies were generated with PGAS. Variants were called with PAV (https://github.com/EichlerLab/pav) and merged into a nonredundant callset. QC was applied to the callset removing records with little or no orthogonal support.

Citation: In progress