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Published November 2, 2020 | Version v1.9.1
Software Open

ENCODE-DCC/atac-seq-pipeline: v1.9.1

Creators

  • 1. Stanford University
  • 2. AstraZeneca AB

Description

Bug fixes

  • Dependencies
    • py2 Conda environment
      • Fixed biopython at 1.76 which is the last version that supports py2.
    • py3 Conda environment
      • Added Caper's python dependency scikit-learn to it.

starch support

  • Generate starch output for blacklist-filtered peaks (.starch).
  • New Croo output definition JSON (v5) for starches.

Files

ENCODE-DCC/atac-seq-pipeline-v1.9.1.zip

Files (688.5 kB)

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Additional details

Related works

Is supplement to
https://github.com/ENCODE-DCC/atac-seq-pipeline/tree/v1.9.1 (URL)