Published September 28, 2020
| Version v2
Journal article
Open
Data from: Assessment of imputation from low-pass sequencing to predict merit of beef steers
Creators
- 1. USDA-ARS-USMARC
- 2. Gencove, Inc
Description
Sup1.tsv: Tab separated text list of animals in imputation reference, containing ID, SRR Accessions, Source, Breed and number of downsampled progeny examined in this study.
Sup2.vcf.gz: VCF-formatted text containing snpEff annotation of variants imputed from low-pass sequence.
Sup3.tsv: Tab separated text summarizing number of variants, low-confidence variants and variant spacing in 1 Mb intervals.
Sup4.tsv: Tab separated text with correlations between molecular breeding values with SNP effects applied to genotypes imputed from low-pass sequence or SNP arrays.
steerworkflow.pdf: Diagram depicting processes to obtain imputed genotypes, (G)EBV and MBV of the study steers
Files
steerworkflow.pdf
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