Journal article Open Access

Data from: Assessment of imputation from low-pass sequencing to predict merit of beef steers

Snelling, Warren M; Hoff, Jesse L; Li, Jeremiah H; Kuehn, Larry A; Keel, Brittney N; Lindholm-Perry, Amanda K; Pickrell, Joseph K

Sup1.tsv: Tab separated text list of animals in imputation reference, containing ID, SRR Accessions, Source, Breed and number of downsampled progeny examined in this study.

Sup2.vcf.gz: VCF-formatted text containing snpEff annotation of variants imputed from low-pass sequence.

Sup3.tsv: Tab separated text summarizing number of variants, low-confidence variants and variant spacing in 1 Mb intervals. 

Sup4.tsv:  Tab separated text with correlations between molecular breeding values with SNP effects applied to genotypes imputed from low-pass sequence or SNP arrays.

steerworkflow.pdf:  Diagram depicting processes to obtain imputed genotypes, (G)EBV and MBV of the study steers

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