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Published October 20, 2020 | Version 3.2.0
Software Open

nipy/nibabel: 3.2.0

Creators

  • 1. School of Psychology, University of Birmingham, Birmingham, UK
  • 2. Stanford University
  • 3. Otto-von-Guericke-University Magdeburg, Germany
  • 4. Microsoft Research, Montréal, Québec, Canada
  • 5. UC San Diego
  • 6. MIT
  • 7. Center for Open Neuroscience, Dartmouth College
  • 8. Dartmouth College: Hanover, NH, United States
  • 9. Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK
  • 10. University of Washington: Seattle, WA, United States
  • 11. MIT, HMS
  • 12. Athena EPI, Inria Sophia-Antipolis
  • 13. Institute of Neuroinformatics, ETH/University of Zurich
  • 14. Deptartment of Radiology, University of Cincinnati College of Medicine, Cincinnati, OH
  • 15. Harvard University - Psychology
  • 16. Department of Computer Science, Aalto University, Espoo, Finland and Department of Neuroscience, Imaging and Clinical Sciences, University G. D'Annunzio, Chieti, Italy
  • 17. The University of Washington eScience Institute
  • 18. Montreal Neurological Institute and Hospital
  • 19. Department of Psychology, University of California Davis, CA, USA
  • 20. Berkeley Institute for Data Science, UC Berkeley
  • 21. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
  • 22. Center for Magnetic Resonance Research, University of Minnesota
  • 23. Google
  • 24. Rotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada
  • 25. SRI International
  • 26. Department of Psychology, Stanford University, CA, USA
  • 27. University College London
  • 28. BrainSpec, Boston, MA
  • 29. INRIA
  • 30. Université de Sherbrooke
  • 31. McGill University
  • 32. University College London, London, UK
  • 33. University of California, San Francisco
  • 34. Department of Neuropsychiatry, University of Pennsylvania
  • 35. Hospital for Sick Children
  • 36. CEA
  • 37. Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA
  • 38. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
  • 39. National Technical University of Athens, Greece
  • 40. Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
  • 41. National Institute of Mental Health and Neuro-Sciences, India

Description

Most work on NiBabel so far has been by Matthew Brett (MB), Chris Markiewicz (CM), Michael Hanke (MH), Marc-Alexandre Côté (MC), Ben Cipollini (BC), Paul McCarthy (PM), Chris Cheng (CC), Yaroslav Halchenko (YOH), Satra Ghosh (SG), Eric Larson (EL), Demian Wassermann, Stephan Gerhard and Ross Markello (RM).

References like "pr/298" refer to github pull request numbers.

3.2.0 (Tuesday 20 October 2020)

New feature release in the 3.2.x series.

New features
  • nib-stats CLI tool to expose new nibabel.imagestats API. Initial implementation of volume calculations, a la fslstats -V. (pr/952) (Julian Klug, reviewed by CM and GitHub user 0rC0)
  • nib-roi CLI tool to crop images and/or flip axes (pr/947) (CM, reviewed by Chris Cheng and Mathias Goncalves)
  • Parser for Siemens "ASCCONV" text format (pr/896) (Brendan Moloney and MB, reviewed by CM)
Enhancements
  • Drop confusing mention of img.to_filename() in getting started guide (pr/946) (Fernando Pérez-Garcia, reviewed by MB, CM)
  • Implement to_bytes()/from_bytes() methods for Cifti2Image (pr/938) (CM, reviewed by Mathias Goncalves)
  • Clean up of DICOM documentation (pr/910) (Jonathan Daniel, reviewed by MB)
Bug fixes
  • Use canvas manager API to set title in OrthoSlicer3D (pr/958) (EL, reviewed by CM)
  • Record units as seconds parrec2nii; previously set TR to seconds but retained msec units (pr/931) (CM, reviewed by MB)
  • Reflect on-disk dimensions in NIfTI-2 view of CIFTI-2 images (pr/930) (Mathias Goncalves and CM)
  • Fix outdated Python 2 and Sympy code in DICOM derivations (pr/911) (MB, reviewed by CM)
  • Change string with invalid escape to raw string (pr/909) (EL, reviewed by MB)
Maintenance
  • Fix typo in docs (pr/955) (Carl Gauthier, reviewed by CM)
  • Purge nose from nisext tests (pr/934) (Markéta Calábková, reviewed by CM)
  • Suppress expected warnings in tests (pr/949) (CM, reviewed by Dorota Jarecka)
  • Various cleanups and modernizations (pr/916, pr/917, pr/918, pr/919) (Jonathan Daniel, reviewed by CM)
  • SVG logo for improved appearance in with zooming (pr/914) (Jonathan Daniel, reviewed by CM)
API changes and deprecations
  • Drop support for Numpy < 1.13 (pr/922) (CM)
  • Warn on use of onetime.setattr_on_read, which has been a deprecated alias of auto_attr (pr/948) (CM, reviewed by Ariel Rokem)

Files

nipy/nibabel-3.2.0.zip

Files (4.6 MB)

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Additional details

Related works

Is supplement to
https://github.com/nipy/nibabel/tree/3.2.0 (URL)