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Kraken2 & Kaiju pre-indexed databases

Carlo Ferravante; Domenico Memoli; Domenico Palumbo; Paolo Ciaramella; Antonio Di Loria; Ylenia D'Agostino; Giovanni Nassa; Francesca Rizzo; Roberta Tarallo; Alessandro Weisz; Giorgio Giurato

HOME-BIO is a dockerized solution for metagenomics. Inside a DOCKER image, we installed UBUNTU with python 3.7, python 2.7, and Anaconda 3 (V. 2020/02). Inside an anaconda base environment, we installed two common metagenomics software, KAIJU and KRAKEN 2, and other mandatory softwares for the pipeline. In order to run a metagenomic analysis, you should download different genome reference for bacteria, protozoa or virus. Here, we provide a previously indexed version of all of them as one *.zip file.

For further information see https://github.com/carlferr/HOME-BIO.

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