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Published September 20, 2020 | Version v1.4.11
Software Open

bactopia/bactopia: OSX Compatibility, bug fixes

Creators

  • 1. Emory University
  • 2. Faculty of Computer Science, Dalhousie University

Description

v1.4.11 bactopia/bactopia "Metamorph Ring" - 2020/09/19 Added

  • bactopia build checks if each environment is built before building
  • Can specify bactopia build to build a specific environment
  • Removed build numbers in Conda environment yamls
  • Created separate Conda yamls for Linux and Mac
  • NCBI assembly accessions will retrieve the most current version (e.g. .1, .2, .3, etc...)
Fixed
  • bactopia datasets trailing whitespace in species names
  • bactopia datasets random subsample missing specified species when --limit and --include_genus used
  • GitLab CI OSX compatibility
  • Adaptive resource allocations
  • Datasets are checked for existence
  • Variant calls against references with multiple chromosomes

Files

bactopia/bactopia-v1.4.11.zip

Files (45.2 MB)

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md5:5b020a6e4acf36587cb2b7f71e6a79a7
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Additional details

Related works

Is supplement to
https://github.com/bactopia/bactopia/tree/v1.4.11 (URL)