Dataset Open Access

Combining StarDist and TrackMate example 2 - T cell dataset

Nathan H. Roy; Guillaume Jacquemet

Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist)

Training dataset: 209 Paired microscopy images (brightfield) and corresponding masks

Microscopy data type: brightfield microscopy and masks obtained via manual segmentation (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist for details about the segmentation)

Microscope: Imaging was done using a 10x phase contrast objective at 37°C on a Zeiss Axiovert 200M microscope equipped with an automated X-Y stage and a Roper EMCCD camera. Time-lapse images were collected every 30 sec for 10 min using SlideBook 6 software (Intelligent Imaging Innovations).

File format: .tif (16-bit for brightfield images and 8 and 16-bit for the masks)

Image size: 1024x1024 (Pixel size: 645 nm)

Files (331.4 MB)
Name Size
T cell dataset.zip
md5:a547b43e7e87341bb49d4681eb696a66
331.4 MB Download
175
36
views
downloads
All versions This version
Views 175175
Downloads 3636
Data volume 11.9 GB11.9 GB
Unique views 159159
Unique downloads 3636

Share

Cite as