Dataset Open Access

Combining StarDist and TrackMate example 2 - T cell dataset

Nathan H. Roy; Guillaume Jacquemet

Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see

Training dataset: 209 Paired microscopy images (brightfield) and corresponding masks

Microscopy data type: brightfield microscopy and masks obtained via manual segmentation (see for details about the segmentation)

Microscope: Imaging was done using a 10x phase contrast objective at 37°C on a Zeiss Axiovert 200M microscope equipped with an automated X-Y stage and a Roper EMCCD camera. Time-lapse images were collected every 30 sec for 10 min using SlideBook 6 software (Intelligent Imaging Innovations).

File format: .tif (16-bit for brightfield images and 8 and 16-bit for the masks)

Image size: 1024x1024 (Pixel size: 645 nm)

Files (331.4 MB)
Name Size
T cell
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Data volume 11.9 GB11.9 GB
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