Published August 24, 2020 | Version v.1
Dataset Open

Taxonomic and functional annotations of the Integrated non-redundant Gene Catalog 9.9

Creators

  • 1. Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE – Le Moulon, 91190, Gif-sur-Yvette, France
  • 2. MaIAGE, INRAE, , Université Paris-Saclay, 78350 Jouy-en-Josas, France
  • 3. US1367 MetaGenoPolis, INRAE, AgroParisTech, Université Paris-Saclay, 78350 Jouy-en-Josas, France
  • 4. Micalis Institute, INRAE, AgroParisTech, Université Paris-Saclay, 78350 Jouy-en-Josas, France
  • 5. Sorbonne Université, Inserm, UMRS Nutrition et Obésités; approches systémiques, Paris, France

Description

The Integrated non-redundant Gene Catalog (IGC) 9.9 is a database of 9.9 million genes from 1267 individual fecal samples together with the Homo sapiens database (MetaHIT project, grant agreement 201052). This repository contains the taxonomic and functional annotation of the IGC database.

full_taxonomy_MetaHIT99.tsv : Taxonomic assignment of proteins from IGC database with the sequence aligner DIAMOND against the non-redundant NCBI database, with an e-value threshold of 10-4   

KEGG89_IGC_hs99.table : Functional annotation of proteins from IGC database with KEGG resource with an e-value threshold of 10-5, a bit-score threshold of 60 and using the sensitive mode of DIAMOND

Notes

Funding sources This work was supported by the Agence Nationale de la Recherche (ANR) as part of the MICRO-Obes (ANR-07-GMGE-002.1-01) and the ProteoCardis (ANR-15-CE14-0013) projects, and by the Métaprogramme INRA as part of the ObOmics project.

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