Published August 20, 2020
| Version v1
Journal article
Open
PhyloCorrelate: prediction of gene-gene functional associations through large-scale phylogenetic profiling
Description
Data related to the PhyloCorrelate database. Included are the GTDB bacterial tree, the presence-absence matrices for PFAM, TIGRFAM, and KO in the fst format (https://github.com/fstpackage/fst), and the GO:BP/Pathway annotation data used for functional prediction. The rows of the presence-absence matrices represent the genomes of the GTDB bacterial tree, which are stored separately as "genomes.txt".
To see how to use these files, go to https://github.com/bjmt/phylocorrpkg.
Files
genomes.txt
Files
(199.3 MB)
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