Published August 7, 2020
| Version v1
Dataset
Open
Recombination detection program (RDP4) results for ICMV and SLCMV DNA-B
- 1. Rutgers University
Description
A DNA-B multiple alignment (Zenodo record 3964977) was scanned with RDP4.100 (D. Martin et al. 2015). Recombination breakpoints for events with statistical support from at least 5 of 7 methods were adjusted per the manual (high-confidence accepted events). A CSV file with the results for the accepted events was exported and then saved a second time with Excel to normalize format (a comma in between every column).
Note added 2020-09-07: AJ575821 is listed in the files as ICMV based on its assignment in the NCBI Taxonomy database (taxa 341701 and 31600) but it is better classified as SLCMV.
These results will be described in a manuscript by Crespo-Bellido et al.
Files
ICMV-SLCMV_DNA-B_v1.csv
Files
(250.8 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:8a0a1d2474231110b47bde47fcd189d1
|
3.8 kB | Preview Download |
|
md5:f764cad3a548e190e60391e3499e4f3f
|
247.1 kB | Download |
Additional details
Related works
- Is documented by
- Dataset: 10.5281/zenodo.3964977 (DOI)
Funding
- U.S. National Science Foundation
- PIRE: U.S.-East Africa Research and Education Partnership: Cassava mosaic disease - A paradigm for the evolution of insect-transmitted plant virus pathosystems 1545553