Published April 10, 2020
| Version V1
Dataset
Open
supplementary of UTUC-Normal
Creators
- 1. Biomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences, Peking University
- 2. Department of Urology, Peking University People's Hospital
- 3. Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University
- 4. Department of Pathology, Peking University People's Hospital
- 5. Department of Pathology, School of Basic Medical Sciences, Peking University Third Hospital, Peking University Health Science Center
Description
Accompanies a manuscript regarding the mutant clonal expansion in human morphologically normal urothelium (bladder and ureter). Contains:
1. Input, output and R code for clustering somatic mutations based on the Dirichlet process.
2. Input for the ABSOLUTE analysis (copy number alteration analysis).
3. Input for the ReCapSeg analysis (copy number alteration analysis).
4. Output figures for the ABSOLUTE analysis (copy number alteration analysis).
5. Output segmentation files for the ABSOLUTE analysis (copy number alteration analysis).
6. Output for the Sequenza analysis (copy number alteration analysis).
7. Input VCF files for the mutational signature analysis.
8. VCF files containing all SNVs.
9. VCF files containing all INDELs.
Files
DP_input_output_code.zip
Files
(2.1 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:91e08569d8d27d860e9f272126370c86
|
47.4 kB | Download |
|
md5:af0caea099a75d12472cacb74ff605eb
|
2.5 MB | Download |
|
md5:74af01dc8698489b55c9ead0af86d5c1
|
198.0 kB | Preview Download |
|
md5:3e9c2b38defddf0fdfb7f2b1227926c1
|
3.2 MB | Preview Download |
|
md5:de61d8cb18d5e18d1c51453744d87193
|
1.6 MB | Preview Download |
|
md5:d2751ff029e0b1a37601d56e105d399d
|
1.5 GB | Download |
|
md5:922cac56896f7f9b425190575a59cb88
|
9.1 MB | Download |
|
md5:eb32fb9e8a757e1bdff8d2f767ee4ff4
|
569.0 MB | Download |
|
md5:fc6fd1c4024f03c973f6971b5898281e
|
555.6 kB | Preview Download |