reneshbedre/bioinfokit: Bioinformatics data analysis and visualization toolkit

v0.9 has the following updates and changes (July 28, 2020)

• gene expression raw count normalization class added as 'analys.norm'
• CPM and RPKM normalization function added under 'analys.norm' class
• Sugarcane gene expression dataset added (Bedre et al., 2019)
• In volcano, 'ma', and involcano plots, checks for lfc_thr, counts, and pv_thr added
• legend labels, position, and figname parameters added in volcano plot
• utility to check the non-numeric values added for ma, volcano and involcano
• plotlegend parameter added to ma
• the parameter for log fold change threshold lines added in ma plot
• legend labels, position, and figname parameters added in ma plot
• tsneplot added for t-SNE visualization
• in bardot drop NA value function added to ignore missing values to plot dots
• scRNA-seq dataset added (PBMC and Arabidopsis root cells)
• fasta_reader and rev_com moved to newly created fasta class
• tsneplot and vcf_anot initialized for future release
• more parameters added in biplot (cluster coloring, datapoints)
• figname added in hmap
• ma function updated for absolute expression counts
• svg figures added
• pca function will be deprecated in future release
• 2D and 3D loadings plot, biplot and scree plot functions added under the cluster class for PCA
• programmatic access to iris and cotton dataset added
• pca function will be deprecated in future release