Published August 7, 2020
| Version v1
Dataset
Open
Recombination detection program (RDP4) results for EACMV-like DNA-B sequences (7 "species")
- 1. Rutgers University
Description
A DNA-B multiple alignment (Zenodo record 3965023) was scanned with RDP4.97 (D. Martin et al. 2015). The input sequences belong to 7 “species”: CMMGV, EACMCV, EACMV, EACMKV, EACMMV, EACMZV, SACMV. Recombination breakpoints for events with statistical support from at least 5 of 7 methods were adjusted per the manual. These events were explicitly accepted, with the exception of one event which lost significance after adjustment of breakpoints. A CSV file with the results was exported and then saved a second time with Excel to normalize format (a comma in between every column).
These results are described in a paper by Crespo-Bellido et al. (2021) https://doi.org/10.1128/JVI.00541-21
Files
CMMGV-EACMCV-EACMV-EACMKV-EACMMV-EACMZV-SACMV_7spp_DNA-B_v1.csv
Files
(1.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:c3f2723b6550c0ce833493403417a4aa
|
42.1 kB | Preview Download |
|
md5:bb18670b990795f89958b0275b628ba1
|
1.2 MB | Download |
Additional details
Related works
- Is documented by
- Dataset: 10.5281/zenodo.3965023 (DOI)
- Is supplement to
- Journal article: 10.1128/JVI.00541-21 (DOI)
Funding
- U.S. National Science Foundation
- PIRE: U.S.-East Africa Research and Education Partnership: Cassava mosaic disease - A paradigm for the evolution of insect-transmitted plant virus pathosystems 1545553