Published July 28, 2020
| Version v1
Dataset
Open
Multiple alignment of ICMV and SLCMV DNA-B sequences
- 1. Rutgers University
Description
All sequences available in GenBank as of 2019-06-03 were downloaded via the Taxonomy Browser interface. Sequence names were normalized/simplified and orientations of these circular sequences were standardized to begin at the replication origin nick site. Sequences were aligned with MUSCLE and alignments were adjusted with SeAl and AliView.
Note added 2020-09-07: AJ575821 is listed in the file as ICMV based on its assignment in the NCBI Taxonomy database (taxa 341701 and 31600) but it is better classified as SLCMV.
These results are described in a paper by Crespo-Bellido et al. (2021) https://doi.org/10.1128/JVI.00541-21
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Additional details
Related works
- Documents
- Dataset: 10.5281/zenodo.3975838 (DOI)
- Is supplement to
- Journal article: 10.1128/JVI.00541-21 (DOI)
Funding
- U.S. National Science Foundation
- PIRE: U.S.-East Africa Research and Education Partnership: Cassava mosaic disease - A paradigm for the evolution of insect-transmitted plant virus pathosystems 1545553