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Published July 2, 2020 | Version v1.0.0
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TomKellyGenetics/graphsim: Version 1.0.0

  • 1. RIKEN IMS
  • 2. Otago University

Description

  • Major stable release: note changes to results are possible! (legacy code should run without breaking)

  • Expanded documentation and examples (consolidate into fewer vignettes for clarity)

  • Resolves errors handling inhibiting edges

  • Efficiently compute a state matrix from a vector of edge properties from paths

  • Enables passing "sd" (standard deviation) to alter covariance of Sigma matrix

  • Adds methods for computing using Laplacian matrices

  • Adds function to compute simulations directly from an adjacency matrix

  • Migrates computing states to sigma (these matrices include inhibitions)

See JOSS review for details.

Files

TomKellyGenetics/graphsim-v1.0.0.zip

Files (10.8 MB)

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