Info: Zenodo’s user support line is staffed on regular business days between Dec 23 and Jan 5. Response times may be slightly longer than normal.

Biodiversity Literature Repository
Published March 13, 2019 | Version v1
Journal article Open

DNA Barcoding and Integrative Taxonomy of the Heterolepisma sclerophylla species complex (Zygentoma: Lepismatidae: Heterolepismatinae) and the Description of Two New Species

Creators

  • 1. Australian Museum Research Institute, Australian Museum, 1 William Street, Sydney New South Wales 2010, Australia & Federation University Australia, PO Box 663, Ballarat Victoria 3353, Australia
  • 2. Australian Museum Research Institute, Australian Museum, 1 William Street, Sydney New South Wales 2010, Australia
  • 3. School of Science, Marist College, 3399 North Rd, Poughkeepsie, New York 12601, United States of America

Description

Smith, Graeme B., Mitchell, Andrew, Lee, Timothy R. C., Espinasa, Luis (2019): DNA Barcoding and Integrative Taxonomy of the Heterolepisma sclerophylla species complex (Zygentoma: Lepismatidae: Heterolepismatinae) and the Description of Two New Species. Records of the Australian Museum 71 (1): 1-32, DOI: 10.3853/j.2201-4349.71.2019.1677

Files

source.pdf

Files (5.2 MB)

Name Size Download all
md5:c10001853bb3982e653fea5d45b18f86
5.2 MB Preview Download

Linked records

Additional details

Identifiers

URL
https://www.checklistbank.org/dataset/21965
LSID
urn:lsid:zoobank.org:pub:124BD25A-7712-4EC6-9A1E-48FC9C23B513
LSID
urn:lsid:plazi.org:pub:C100FF85FFB3982E653FEA5DFFB1FF86
URL
http://publication.plazi.org/id/C100FF85FFB3982E653FEA5DFFB1FF86

Cites
Publication: 10.1080/00401706.1964.10490181 (DOI)
Publication: 10.1093/nar/gkh340 (DOI)
Publication: 10.1046/j.0307-6970.2001.00163.x (DOI)
Publication: 10.1111/j.1096-0031.2006.00127.x (DOI)
Publication: 10.11646/zootaxa.4126.2.3 (DOI)
Publication: 10.1093/bioinformatics/bts199 (DOI)
Publication: 10.1093/molbev/msw054 (DOI)
Publication: 10.1093/molbev/mss020 (DOI)
Publication: 10.1371/journal.pone.0046180 (DOI)
Publication: 10.1109/GCE.2010.5676129 (DOI)
Publication: 10.1111/1755-0998.12380 (DOI)
Publication: 10.1071/IS12026 (DOI)
Publication: 10.1371/journal.pone.0009490 (DOI)
Publication: 10.1111/j.1471-8286.2007.01678.x (DOI)
Publication: 10.1371/journal.pone.0090653 (DOI)
Publication: 10.1093/sysbio/sys029 (DOI)
Publication: 10.1111/1755-0998.12655 (DOI)
Publication: 10.18195/issn.0313-122x.83.2013.229-240 (DOI)
Publication: 10.3853/j.2201-4349.68.2016.1652 (DOI)
Publication: 10.3853/j.2201-4349.68.2016.1662 (DOI)
Publication: 10.18195/issn.0312-3162.27(2).2012.101-116 (DOI)
Publication: 10.1093/bioinformatics/btl446 (DOI)
Publication: 10.1111/j.1471-8286.2007.01821.x (DOI)
Publication: 10.1080/00779962.2013.800698 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.3852260 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/3D3987FDFFBE982365CFEB70FE67FE55 (URL)
Taxonomic treatment: 10.5281/zenodo.3852254 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/3D3987FDFFBE98236583EBA2FE36FD1D (URL)
Taxonomic treatment: 10.5281/zenodo.3852258 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/3D3987FDFFBE982365F2E89AFD11FCE8 (URL)
Taxonomic treatment: 10.5281/zenodo.3852256 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/3D3987FDFFBE98236585E9FFFB7DFA5C (URL)
Taxonomic treatment: 10.5281/zenodo.3852262 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/3D3987FDFFBC983B664EEBE0FDBAF919 (URL)
Taxonomic treatment: 10.5281/zenodo.3852264 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/3D3987FDFFA6983366B2EAC4FD7EFD22 (URL)
Figure: 10.5281/zenodo.3837979 (DOI)
Figure: 10.5281/zenodo.3837981 (DOI)
Figure: 10.5281/zenodo.3837983 (DOI)
Figure: 10.5281/zenodo.3837985 (DOI)
Figure: 10.5281/zenodo.3837987 (DOI)
Figure: 10.5281/zenodo.3837989 (DOI)
Figure: 10.5281/zenodo.3837991 (DOI)
Figure: 10.5281/zenodo.3837993 (DOI)
Figure: 10.5281/zenodo.3837995 (DOI)
Figure: 10.5281/zenodo.3837997 (DOI)
Figure: 10.5281/zenodo.3837999 (DOI)
Figure: 10.5281/zenodo.3838001 (DOI)
Figure: 10.5281/zenodo.3838003 (DOI)
Figure: 10.5281/zenodo.3838007 (DOI)
Figure: 10.5281/zenodo.3838009 (DOI)
Figure: 10.5281/zenodo.3838011 (DOI)
Is source of
Dataset: https://www.gbif.org/dataset/9a9b8fd9-2aaa-4f81-b833-24bc5c400ba8 (URL)

References

  • Adel, T. 1984. Sensilleninventar und sensillenmuster auf den Antennen von Thermobia domestica und Lepisma saccharina (Insecta: Zygentoma). Braunschweiger Naturkundliche Schriften 2: 191-217.
  • Dinno, A. 2017. dunn.test: Dunn's Test of Multiple Comparisons Using Rank Sums. R package version 1.3.5.
  • Dunn, O. J. 1964. Multiple comparisons using rank sums. Technometrics 6(3): 241-252. https://doi.org/10.1080/00401706.1964.10490181
  • Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32(5): 1792-1797. https: //doi.org/10.1093/nar/gkh340
  • Edgecombe, G. D., G. Giribet, and W. C. Wheeler. 2002. Phylogeny of Henicopidae (Chilopoda: Lithobiomorpha): a combined analysis of morphology and five molecular loci. Systematic Entomology 27: 31-64. https: //doi.org/10.1046/j.0307-6970.2001.00163. x
  • Escherich, K. 1905. Das System der Lepismatiden. Zoologica (Stuttgart) 43(18): 1-164.
  • Espinasa, L., and E. C. Cappuccio. 2008. New genus allocation for the cavernicolous nicoletiids (Insecta: Zygentoma) of Aruba and description of their previously unknown males. Proceedings of the Biological Society of Washington 110(2): 292-299.
  • Espinasa, L., C. Flick, and G. Giribet. 2007. Phylogeny of the American silverfish Cubacubaninae (Hexapoda: Zygentoma: Nicoletiidae): a combined approach using morphology and five molecular loci. Cladistics 23: 22-40. https://doi. org/10.1111/j.1096-0031.2006.00127. x
  • Espinasa, L., and G. Giribet. 2009. Living in the dark-the taxonomic status, phylogeography and dispersal capabilities of the nicoletiid genus Texoreddellia Wygodzinsky, 1973 (Hexapoda, Zygentoma, Nicoletiidae) in Texas and Mexico. Texas Memorial Museum Speleological Monographs 7(V): 87-110.
  • Espinasa, L., N. D. Bartoli, D. M. Centone, C. S. Haruta, and J. R. Reddell. 2016. Revision of genus Texoreddellia Wygodzinsky, 1973 (Hexapoda, Zygentoma, Nicoletiidae), a prominent element of the cave-adapted fauna of Texas. Zootaxa 4126(2): 221-239. https://doi. org/10.11646/zootaxa.4126.2.3
  • Hanner, R. 2009. Proposed standards for BARCODE records in INSDC (BRIs). Technical report, Database Working Group, Consortium for the Barcode of Life. http: //www.boldsystems.org/docs/dwg_data_standards-final. pdf
  • Irish, J. 1990. Phylogeny of the Lepismatidae (Thysanura), with a revision of the southern African genera. Unpublished Ph.D. thesis, Faculty of Science, University of Pretoria. 337 pp.
  • Kearse, M., R. Moir, A. Wilson, S. Stones-Havas, M. Cheung, S. Sturrock et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647-1649. https://doi.org/10.1093/bioinformatics/bts199
  • Kumar, S., G. Stecher, and K. Tamura. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33: 1870-1874. https://doi.org/10.1093/molbev/msw054
  • Lanfear, R., B. Calcott, S. Y. Ho, and S. Guindon. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analysis. Molecular Biology and Evolution 29: 1695-1701. https://doi.org/10.1093/molbev/mss020
  • Machida, R. J., and N. Knowlton. 2012. PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences. PLoS ONE 7(9): e46180. https://doi.org/10.1371/journal.pone.0046180
  • Mendes, L. F. 1991. 1.1. On the phylogeny of the genera of Lepismatidae (Insecta: Zygentoma). In Advances in management and conservation of soil fauna, ed. G. K. Veeresh, D. Rajagopal and C.A. Viraktamath, pp. 3-13. New Delhi Bombay Calcutta: Oxford & IBH Publishing Co. Pvt. Ltd.
  • Miller, M. A., W. Pfeiffer, and T. Schwartz. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop (GCE), New Orleans, LA, USA. IEEE, 1-8. https://doi.org/10.1109/GCE.2010.5676129
  • Mitchell, A. 2015. Collecting in collections: a PCR strategy and primer set for DNA barcoding of decades-old dried museum specimens. Molecular Ecology Resources 15: 1102-1111. https://doi.org/10.1111/1755-0998.12380
  • Paclt, J. 1967. Thysanura.Fam. Lepidotrichidae, Maindroniidae, Lepismatidae. Genera Insectorum 218e: 1-86.
  • Porco, D., A. Bedos, Penelope Greenslade, C. Janion, D. Skarzynski, M. I. Stevens, B. Jansen van Vuuren, and L. Deharveng. 2012. Challenging species delimitation in Collembola: cryptic diversity among common springtails unveiled by DNA barcoding. Invertebrate Systematics 26: 470-477. https://doi.org/10.1071/IS12026
  • Price, M. N., P. S. Dehal and A. P. Arkin. 2010. FastTree 2- Approximately Maximum-Likelihood Trees for Large Alignments. PLoS One 5: e9490. https://doi.org/10.1371/journal.pone.0009490
  • R Core Team. 2017. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
  • Ratnasingham, S., and P. D. N. Hebert. 2007. BOLD: The Barcode of Life Data System (www.barcodinglife.org). Molecular Ecology Notes 7: 355-364. https://doi.org/10.1111/j.1471-8286.2007.01678.x
  • Resch M. C., J. Shrubovych, D. Bartel, N. U. Szucsich, G. Timelthaler et al. 2014. Where taxonomy based on subtle morphological differences is perfectly mirrored by huge genetic distances: DNA Barcoding in Protura (Hexapoda). PLoS One 9(3): e90653. https://doi.org/10.1371/journal.pone.0090653
  • Ronquist, F., M. Teslenko, P. van der Mark, D. L. Ayres, A. Darling, S. Hohna, B. Larget, L. Liu, M. A. Suchard, and J. P. Huelsenbeck. 2012. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology 61(3): 539-542. https://doi.org/10.1093/sysbio/sys029
  • Ruane, S., and C. C. Austin. 2017. Phylogenomics using formalinfixed and 100+ year-old intractable natural history specimens. Molecular Ecology Resources 17(5): 1003-1008. https://doi.org/10.1111/1755-0998.12655
  • Silvestri, F. 1908. Thysanura. In Die Fauna Sudwest-Australiens. Ergebnisse der Hamburger sudwestaustralischen Forschungsreise 1905, ed. W. Michaelsen and R. Hartmeyer, vol. 2, pp. 47-68. Jena: Gustav Fischer.
  • Smith, G. B. 2013. A new species of Heterolepisma from Barrow Island (Zygentoma: Lepismatidae). Records of the Western Australian Museum. Supplement 83: 229-240. https://doi.org/10.18195/issn.0313-122x.83.2013.229-240
  • Smith, G. B. 2014.Two new species of Heterolepisma (Zygentoma: Lepismatidae) from eastern New South Wales. General and Applied Entomology: The Journal of the Entomological Society of New South Wales 42(2013): 7-22 (published 2014).
  • Smith, G. B. 2016a. On some silverfish taxa from Tasmania (Zygentoma: Lepismatidae and Nicoletiidae). Records of the Australian Museum 68(2): 45-80. https://doi.org/10.3853/j.2201-4349.68.2016.1652
  • Smith, G. B. 2016b. Revision of the silverfish genus Anisolepisma (Zygentoma: Lepismatidae: Acrotelsatinae). Records of the Australian Museum 68(6): 269-312. https://doi.org/10.3853/j.2201-4349.68.2016.1662
  • Smith, G. B. 2017. The Australian silverfish fauna (order Zygentoma)-abundant, diverse, ancient and largely ignored. General and Applied Entomology: The Journal of the Entomological Society of New South Wales 45(Aug 2017): 9-58.
  • Smith, G. B., S. M. Eberhard, G. Perina, and T. Finston. 2012. New species of short range endemic troglobitic silverfish (Zygentoma: Nicoletiidae) from subterranean habitats in Western Australia's semi-arid Pilbara region. Records of the Western Australian Museum 27: 101-116. https://doi.org/10.18195/issn.0312-3162.27(2).2012.101-116
  • Stamatakis, A. 2006. RAxML-VI-HPC: Maximum Likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. https://doi.org/10.1093/bioinformatics/btl446
  • Tillyard, R. J. 1924. Primitive wingless insects. Part I. The silverfish, bristletails and their allies (Order Thysanura). New Zealand Journal of Science and Technology 7: 232-242.
  • Villesen, P. 2007. FaBox: an online toolbox for FASTA sequences. Molecular Ecology Notes 7: 965-968. https://doi.org/10.1111/j.1471-8286.2007.01821.x
  • Vink, C. J., and S. D. J. Brown. 2014. High mitochondrial DNA sequence divergence in Sminthurus viridis (Linnaeus) (Collembola: Sminthuridae) from New Zealand. New Zealand Entomologist 37: 29-34. https://doi. org/10.1080/00779962.2013.800698
  • Vu, V. Q. 2011. ggbiplot: A ggplot2 based biplot. R package version 0.55. http://github.com/vqv/ggbiplot
  • Wygodzinsky, P. 1961. Synonymical notes on the Lepismatidae (Thysanura). Pan-Pacific Entomologist 37(4): 213-216.
  • Wygodzinsky, P. 1967. On the geographical distribution of the South American Microcoryphia and Thysanura (Insecta). In Biologie de L'Amerique Australe, ed. D. Debouttville and E. Rapoport, vol. 3, pp. 505-524. Paris: Centre National de la Recherche Scientifique.