Published May 18, 2020
| Version v0.2.2
Software
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COVID-19 Genotyping Tool (CGT) - v0.2.2
Description
The Covid-19 Genotyping Tool (CGT) is an R-Shiny based web application that allows researchers to upload fasta sequences of Covid-19 viral genomes and compare with public sequence data available on GISAID. Genomic distance is visualized using manifold projection and network analysis, and genotype information with respective to high-prevalence SNPs is determined.
Release 0.2.2 of the Covid-19 Genotyping Tool. Updates include:
- Weekly update to include 2000+ new filtered GISAID sequences
- Masking homoplasic sites prior to DNA distance calculation
- Full core utilization for user-input data processing
- Minor UI fixes
Files
hsmaan/CovidGenotyper-v0.2.2.zip
Files
(618.2 kB)
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md5:ca31cc1f5dad9b5d99638e1571f7671e
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Additional details
Related works
- Is supplement to
- https://github.com/hsmaan/CovidGenotyper/tree/v0.2.2 (URL)