Published April 28, 2020
| Version 1
Dataset
Open
Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)
Creators
- 1. University of Edinburgh
- 2. Royal Botanic Garden Edinburgh
- 3. Botanical Society of Britain and Ireland
Description
This gzipped TAR ball contains data and scripts related to the study on Fair Isle eyebrights by Hannes Becher, Max R. Brown, Gavin Powell, Chris Metherell, Nick J. Riddiford, and Alex D. Twyford, submitted to Plant Communications.
Data: genome assembly of Euphrasia arctica, variant call files of the "tetraploid" and "conserved" sets of scaffolds, per-individual k-mer spectra, mapping depths, etc.
Scripts: R scripts for the analysis of plant trait data, heterozygosity, ect.; an ipython notebook for the analysis of variant data, and a Mathematica notebook with the derivation of the formulae used to fit pop gen parameters to k-mer spectra.
Files
Files
(3.6 GB)
| Name | Size | Download all |
|---|---|---|
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md5:ee36a26fcc06b3ce47fdfa895f122b57
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3.6 GB | Download |
Additional details
Funding
- Hybridization and the origin of novel taxa in Euphrasia NE/L011336/1
- UK Research and Innovation
- Ecological speciation and host adaptation in a parasitic plant NE/R010609/1
- UK Research and Innovation
- Evolutionary consequences of facultative plant parasitism NE/N006739/1
- UK Research and Innovation