Journal article Open Access
Baumgarten Nina;
Hecker Dennis;
Karunanithi Sivarajan;
Schmidt Florian;
List Markus;
Schulz Marcel H.
The data set contains all regulatory elements (REMs) and the additional information used to create the EpiRegio webserver (https://epiregio.de).
The data set consists of 10 tables (CSV-files):
With these tables the underlying database of EpiRegio can easily be reconstructed. The source code for the current version of the EpiRegio webserver version is available at 10.5281/zenodo.3751189. EpiRegio uses the STITCHIT algorithm, which is currently under revision. The preprint is available at http://dx.doi.org/10.1101/585125.
Name | Size | |
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CellTypeInfo.csv.gz
md5:893482b8e2ec02346408f9d0ede2aa42 |
1.0 kB | Download |
clusterREMs_1.csv.gz
md5:945f87f088b5e0dd8566a7fd23e5c9c3 |
7.4 MB | Download |
GeneAnnotation_1.csv.gz
md5:4fb2808ccf9b8f31bd8c29c7cfbf0a7f |
1.0 MB | Download |
GeneExpressionBlueprint_1.csv.gz
md5:2b43a6632029c7b289f260d6950b2874 |
21.0 MB | Download |
GeneExpressionRoadmap_1.csv.gz
md5:77753f17fcb15518046ac296dd84cf07 |
43.1 MB | Download |
GenomeAnnotation_1.csv.gz
md5:83316853916b1df35f35d931d2d0c53f |
97 Bytes | Download |
REMActivity_1.csv.gz
md5:d4668f53c78a657d26379035f96d9ef7 |
6.9 GB | Download |
REMAnnotationModelScore_1.csv.gz
md5:058bcffb802579e8dbc7296b504d351f |
130.3 MB | Download |
sampleInfo_Blueprint_1.csv.gz
md5:f5be3ba36d69cf79abb438c4305ce310 |
557 Bytes | Download |
sampleInfo_Roadmap_1.csv.gz
md5:f1412276ae4f5dc343b0f8930366053b |
1.1 kB | Download |
All versions | This version | |
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