Particle tracking and postprocessing software for: Gary et al., Larval behaviour, dispersal and population connectivity in the deep sea.

This archive contains the particle tracking and postprocessing software used in the production of the results described in Gary et al., Larval behaviour, dispersal and population connectivity in the deep sea (full reference will be inserted once the paper is published).

Three software file archives are attached. Code is released under GPL-3.0 except where specified below and in LICENSE files enclosed.

docker-stefanfgary-ariane-latest.tar.gz contains the modified ARIANE particle tracking code and tcdf Lagrangian trajectory tools used to compute and visualize the ensemble metrics. Modified ARIANE is distributed under a CeCILL license. The original ARIANE is written in FORTRAN 90 by Bruno Blanke and Nicholas Grima at the University of Brest, France, and can be downloaded from https://stockage.univ-brest.fr/~grima/Ariane/doc.html. Modifications to the ARIANE code, by Alan Fox and Stefan Gary, to include vertical swimming behaviours, are identified in the source code with the flags ADF and SFG. https://hub.docker.com/r/stefanfgary/ariane

larval-parameter-sweep-master.zip contains the scripts used to run the modified ARIANE code and postprocess the trajectories https://github.com/stefangary/larval-parameter-sweep

pythonCodeForLarvalBehaviourPaper.tar.gz contains a few python scripts and jupyter notebooks for producing histograms from trajectories and plotting the histogram data (This is distributed under The Unlicense).

tcdf-master.zip  contains the latest versions of the Fortran Lagrangian trajectory tools used to compute and visualize the ensemble metrics. See also https://github.com/stefangary/tcdf

Further details are contained in the downloadable files.