Published March 30, 2020
| Version v3.1.0
Software
Open
biowdl/tasks: Release 3.1.0
Creators
- 1. @LUMC
- 2. Leiden University Medical Center
- 3. Leiden University Medical Center (LUMC)
Description
version 3.1.0
- Default threads for BWA in bwa.Kit task: 4. Samtools sort in the same task: 1. Output BAM compression level to 1.
- Lima: Add missing output to parameter_meta.
- Lima: Remove outputPrefix variable from output section.
- Isoseq3: Make sure stderr log file from Refine is unique and not overwritten.
- Isoseq3: Add workaround in Refine for glob command not locating files in output directory.
- Isoseq3: Fix --min-polya-length argument syntax.
- Lima: Add workaround for glob command not locating files in output directory.
- CCS: Add missing backslash.
- Cutadapt now explicitly calls the
--compression-levelflag with compression level 1 to prevent cutadapt from using very high gzip compression level 6 that uses 400% more cpu time. - Update default docker image for cutadapt and fastqc.
- Default number of cores for cutadapt and bwamem to 4 cores.
Files
biowdl/tasks-v3.1.0.zip
Files
(116.6 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:31771cc0810022bd7e5c1009175b87e6
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Additional details
Related works
- Is supplement to
- https://github.com/biowdl/tasks/tree/v3.1.0 (URL)